CIPF | SGU Lab | UCSF | Sali Lab | DBAli | MAMMOTH

last update

Oct 6th, 2007
DBAli ALERT!
06/17/08 - The DBAli database is no longer being updated.


DBAli. Tools associated to the database.

  • DBAlit! Compare your own structure to the whole PDB (temporarily not available)
  • AnnoLite: Fast annotation of a chain
  • AnnoLyze: Annotate a chain
  • ModClus: Cluster a list of chains
  • ModClus: Cluster from a chain
  • ModDom: Define domains from a chain
  • SALIGN: Get a multiple structure alignment of a list of chains
  • Cluster all similar members of a given chain using the DBAli relationships.
    Predefined sets of parameters for removing high, medium or low redundancy
    Chain: 
    Min Seq. Id.:  Max Seq. Id.: 
    Min RMSD:  Max RMSD: 
    Min % Eqpos:  Max % Eqpos: 
    Max length difference: 
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