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Several helper programs are provided. They all take the name of the RMF file as the first argument and an argument "-f" which is the frame to act on. Negative values for the frame are treated as every nth frame. That is, "-f -2" means take every other frame.
rmf_display outputs an arbitrary hdf5 file to pymol or chimera as appropriate (based on the file name of the second argument). It supports hierarchies, restraints and geometry.rmf_show prints out the hierarchy written to the file.rmf_pdb converts an rmf file to or from a PDB file, assuming all hierarchies in the rmf file are atomic resolution.rmf_dot converts an rmf file to a graphviz graph, which can be displayed nicely and rendered to pdf.rmf_xml converts an rmf file to an XML files that can be opened in an XML viewer (eg Google Chrome or Firefox). These viewers support collapsing of subtrees, which makes it much easier to get around large hierarchies.rmf_info displays information about the attributes found in the RMF and how much they are used.rmf_slice creates a new rmf from frames selected from an existing one.rmf_cat creates a new rmf concatenating several with the same structure.rmf_color adds color information to an RMFAuthor(s): Daniel Russel
Version: SVN.r14091
License: LGPL. This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.