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This is the complete list of members for IMP::atom::BrownianDynamics, including all inherited members.
| __hash__() const (defined in IMP::base::Object) | IMP::base::Object | |
| add_optimizer_state(OptimizerState *obj) (defined in IMP::Optimizer) | IMP::Optimizer | |
| add_optimizer_states(List objs) (defined in IMP::Optimizer) | IMP::Optimizer | |
| add_particle(Particle *obj) (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| add_particles(List objs) (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| BrownianDynamics(Model *m) | IMP::atom::BrownianDynamics | |
| clear_optimizer_states() (defined in IMP::Optimizer) | IMP::Optimizer | |
| clear_particles() (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| clear_range_cache() | IMP::Optimizer | protected |
| do_optimize(unsigned int ns)=0 | IMP::Optimizer | protectedpure virtual |
| FloatIndex typedef (defined in IMP::Optimizer) | IMP::Optimizer | protected |
| FloatIndexes typedef (defined in IMP::Optimizer) | IMP::Optimizer | protected |
| get_current_time() const (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| get_derivative(Model::FloatIndex fi) const (defined in IMP::Optimizer) | IMP::Optimizer | protected |
| get_from(IMP::base::Object *o) (defined in IMP::atom::Simulator) | IMP::atom::Simulator | static |
| get_has_optimizer_states() const (defined in IMP::Optimizer) | IMP::Optimizer | |
| get_has_particles() const (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| get_kt() const | IMP::atom::Simulator | |
| get_last_score() const | IMP::Optimizer | |
| get_last_time_step() const (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| get_maximum_time_step() const (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| get_model() const | IMP::Optimizer | |
| get_name() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_number_of_optimizer_states() const (defined in IMP::Optimizer) | IMP::Optimizer | |
| get_number_of_particles() const (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| get_optimized_attributes() const (defined in IMP::Optimizer) | IMP::Optimizer | protected |
| get_optimizer_state(unsigned int i) const (defined in IMP::Optimizer) | IMP::Optimizer | |
| get_optimizer_states() const (defined in IMP::Optimizer) | IMP::Optimizer | |
| get_particle(unsigned int i) const (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| get_particles() const (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| get_restraints() const | IMP::Optimizer | protected |
| get_scaled_derivative(Model::FloatIndex fi) const (defined in IMP::Optimizer) | IMP::Optimizer | protected |
| get_scaled_value(Model::FloatIndex fi) const (defined in IMP::Optimizer) | IMP::Optimizer | protected |
| get_scoring_function() const | IMP::Optimizer | |
| get_simulation_particle_indexes() const (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| get_simulation_particles() const | IMP::atom::Simulator | |
| get_stop_on_good_score() const (defined in IMP::Optimizer) | IMP::Optimizer | |
| get_temperature() const (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| get_type_name() const =0 | IMP::base::Object | pure virtual |
| get_value(Model::FloatIndex fi) const (defined in IMP::Optimizer) | IMP::Optimizer | protected |
| get_version_info() const =0 | IMP::base::Object | pure virtual |
| IMP_OPTIMIZER | IMP::Optimizer | related |
| Object(std::string name) (defined in IMP::base::Object) | IMP::base::Object | protected |
| optimize(unsigned int max_steps) | IMP::Optimizer | |
| Optimizer() (defined in IMP::Optimizer) | IMP::Optimizer | |
| Optimizer(Model *m, std::string name="Optimizer %1%") (defined in IMP::Optimizer) | IMP::Optimizer | |
| optimizer_states_begin() (defined in IMP::Optimizer) | IMP::Optimizer | |
| optimizer_states_begin() const (defined in IMP::Optimizer) | IMP::Optimizer | |
| optimizer_states_end() (defined in IMP::Optimizer) | IMP::Optimizer | |
| optimizer_states_end() const (defined in IMP::Optimizer) | IMP::Optimizer | |
| particles_begin() (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| particles_begin() const (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| particles_end() (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| particles_end() const (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| remove_optimizer_state(OptimizerState *d) (defined in IMP::Optimizer) | IMP::Optimizer | |
| remove_optimizer_states(List d) (defined in IMP::Optimizer) | IMP::Optimizer | |
| remove_optimizer_states_if(const F &f) (defined in IMP::Optimizer) | IMP::Optimizer | |
| remove_particle(Particle *d) (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| remove_particles(List d) (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| remove_particles_if(const F &f) (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| reserve_optimizer_states(unsigned int sz) (defined in IMP::Optimizer) | IMP::Optimizer | |
| reserve_particles(unsigned int sz) (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| set_check_level(CheckLevel l) | IMP::base::Object | |
| set_current_time(double ct) (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| set_log_level(LogLevel l) | IMP::base::Object | |
| set_maximum_move(double ms) (defined in IMP::atom::BrownianDynamics) | IMP::atom::BrownianDynamics | |
| set_maximum_time_step(double ts) (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| set_model(Model *m) | IMP::Optimizer | |
| set_name(std::string name) (defined in IMP::base::Object) | IMP::base::Object | |
| set_optimizer_states(List ps) (defined in IMP::Optimizer) | IMP::Optimizer | |
| set_optimizer_states_order(List ps) (defined in IMP::Optimizer) | IMP::Optimizer | |
| set_particles(List ps) (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| set_particles_order(List ps) (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| set_scaled_value(Model::FloatIndex fi, Float v) const (defined in IMP::Optimizer) | IMP::Optimizer | protected |
| set_scoring_function(ScoringFunctionInput sf) | IMP::Optimizer | virtual |
| set_stop_on_good_score(bool tf) | IMP::Optimizer | |
| set_temperature(double d) (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| set_use_stochastic_runge_kutta(bool tf) (defined in IMP::atom::BrownianDynamics) | IMP::atom::BrownianDynamics | |
| set_value(Model::FloatIndex fi, double v) const (defined in IMP::Optimizer) | IMP::Optimizer | protected |
| set_was_used(bool tf) const | IMP::base::Object | |
| show(std::ostream &out=std::cout) const | IMP::Optimizer | virtual |
| simulate(double time_in_fs) | IMP::atom::Simulator | |
| Simulator(Model *m, std::string name="Simulator %1%") | IMP::atom::Simulator | |
| update_states() const | IMP::Optimizer | protected |
| width(FloatKey k) const (defined in IMP::Optimizer) | IMP::Optimizer | protected |