IMP::atom::PDBSelector Class Reference

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Detailed Description

Select which atoms to read from a PDB file.

Selector is a general purpose class used to select records from a PDB file. Using descendants of this class one may implement arbitrary selection functions with operator() and pass them to PDB reading functions for object selection. Simple selectors can be used to build more complicated ones. Inheritence means "AND" unless otherwise noted (that is, the CAlphaPDBSelector takes all non-alternate C-alphas since it inherits from NonAlternativePDBSelector).

See also:

read_pdb

Inheritance diagram for IMP::atom::PDBSelector:

List of all members.

Public Member Functions
	PDBSelector (std::string name)
virtual bool	get_is_selected (const std::string &pdb_line) const =0
	Return true if the line should be processed.
Public Member Functions inherited from IMP::base::Object
std::size_t	__hash__ () const
virtual std::string	get_type_name () const =0
	Return a string identifying the type of the object.
virtual IMP::base::VersionInfo	get_version_info () const =0
	Get information about the module and version of the object.
void	set_check_level (CheckLevel l)
void	set_log_level (LogLevel l)
	Set the logging level used in this object.
void	set_was_used (bool tf) const
void	show (std::ostream &out=std::cout) const
const std::string &	get_name () const
void	set_name (std::string name)

Additional Inherited Members
Protected Member Functions inherited from IMP::base::Object
	Object (std::string name)

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Member Function Documentation

virtual bool IMP::atom::PDBSelector::get_is_selected ( const std::string &  pdb_line ) const

pure virtual

Return true if the line should be processed.

Implemented in IMP::atom::NotPDBSelector, IMP::atom::OrPDBSelector, IMP::atom::AndPDBSelector, IMP::atom::PPDBSelector, IMP::atom::NonWaterPDBSelector, IMP::atom::NonWaterNonHydrogenPDBSelector, IMP::atom::HydrogenPDBSelector, IMP::atom::WaterPDBSelector, IMP::atom::ChainPDBSelector, IMP::atom::AllPDBSelector, IMP::atom::NPDBSelector, IMP::atom::CPDBSelector, IMP::atom::CBetaPDBSelector, IMP::atom::CAlphaPDBSelector, IMP::atom::ATOMPDBSelector, and IMP::atom::NonAlternativePDBSelector.

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The documentation for this class was generated from the following file:

• pdb.h