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Return all close ordered pairs of particles taken from the two SingletonContainers.
See ClosePairContainer for a more detailed description. This container lists all close pairs of particles where one particle is taken from each of the input sets.
Examples: bipartite nonbonded interactions, dock with crosslinks
Inheritance diagram for IMP::container::CloseBipartitePairContainer:Public Member Functions | |
| CloseBipartitePairContainer (SingletonContainerInput a, SingletonContainerInput b, double distance, double slack=1) | |
| Get the individual particles from the passed SingletonContainer. | |
| IMP_IMPLEMENT_PAIR_CONTAINER (CloseBipartitePairContainer) | |
| Public Member Functions inherited from IMP::PairContainer | |
| virtual void | apply (const PairModifier *sm) const =0 |
| Apply a SingletonModifier to the contents. | |
| virtual void | apply (const PairDerivativeModifier *sm, DerivativeAccumulator &da) const =0 |
| Apply a SingletonModifier to the contents. | |
| virtual double | evaluate (const PairScore *s, DerivativeAccumulator *da) const =0 |
| Evaluate a score on the contents. | |
| virtual double | evaluate_if_good (const PairScore *s, DerivativeAccumulator *da, double max) const =0 |
| Evaluate a score on the contents. | |
| virtual bool | get_contains_particle_pair (const ParticlePair &v) const =0 |
| virtual unsigned int | get_number_of_particle_pairs () const |
| return the number of Pairs in the container | |
| virtual ParticlePair | get_particle_pair (unsigned int i) const |
| ParticlePairsTemp | get_particle_pairs () const |
| Public Member Functions inherited from IMP::Container | |
| virtual void | do_after_evaluate (DerivativeAccumulator *accpt) |
| Reset changed status. | |
| virtual ParticlesTemp | get_all_possible_particles () const =0 |
| Get contained particles. | |
| virtual ParticlesTemp | get_input_particles () const |
| Return get_all_possible_particles() | |
| virtual bool | get_is_changed () const |
| virtual bool | get_is_decomposable () const |
| virtual ContainersTemp | get_output_containers () const |
| Containers don't have output. | |
| virtual ParticlesTemp | get_output_particles () const |
| Containers don't have output. | |
| Public Member Functions inherited from IMP::Constraint | |
| Constraint (Model *m, std::string name="Constraint %1%") | |
| Public Member Functions inherited from IMP::ScoreState | |
| ScoreState (Model *m, std::string name="ScoreState %1%") | |
| void | after_evaluate (DerivativeAccumulator *accpt) |
| void | before_evaluate () |
| virtual ContainersTemp | get_input_containers () const =0 |
| Public Member Functions inherited from IMP::ModelObject | |
| ModelObject (Model *m, std::string name) | |
| ModelObjectsTemp | get_inputs () const |
| Model * | get_model () const |
| ModelObjectsTemp | get_outputs () const |
| Public Member Functions inherited from IMP::base::Object | |
| std::size_t | __hash__ () const |
| virtual std::string | get_type_name () const =0 |
| Return a string identifying the type of the object. | |
| virtual IMP::base::VersionInfo | get_version_info () const =0 |
| Get information about the module and version of the object. | |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Methods to control the set of filters | |
PairPredicate objects can be used as filters to prevent the addition of pairs to the containeroutput list. Pairs for which the predicates evaluate to a non-zero value are excluded from the list. | |
| void | remove_pair_filter (PairPredicate *d) |
| template<class F > | |
| void | remove_pair_filters_if (const F &f) |
| template<class List > | |
| void | remove_pair_filters (List d) |
| template<class List > | |
| void | set_pair_filters (List ps) |
| template<class List > | |
| void | set_pair_filters_order (List ps) |
| unsigned int | add_pair_filter (PairPredicate *obj) |
| template<class List > | |
| void | add_pair_filters (List objs) |
| void | clear_pair_filters () |
| unsigned int | get_number_of_pair_filters () const |
| bool | get_has_pair_filters () const |
| PairPredicate * | get_pair_filter (unsigned int i) const |
| PairPredicates | get_pair_filters () const |
| void | reserve_pair_filters (unsigned int sz) |
| PairPredicateIterator | pair_filters_begin () |
| PairPredicateIterator | pair_filters_end () |
| PairPredicateConstIterator | pair_filters_begin () const |
| PairPredicateConstIterator | pair_filters_end () const |
Additional Inherited Members | |
| Public Types inherited from IMP::PairContainer | |
| typedef ParticleIndexPair | ContainedIndexType |
| typedef ParticleIndexPairs | ContainedIndexTypes |
| typedef ParticlePair | ContainedType |
| typedef ParticlePairsTemp | ContainedTypes |
| Protected Member Functions inherited from IMP::PairContainer | |
| PairContainer (Model *m, std::string name="PairContainer %1%") | |
| Protected Member Functions inherited from IMP::Container | |
| Container (Model *m, std::string name="Container %1%") | |
| void | set_is_changed (bool tf) |
| This will be reset at the end of evaluate. | |
| IMP::container::CloseBipartitePairContainer::CloseBipartitePairContainer | ( | SingletonContainerInput | a, |
| SingletonContainerInput | b, | ||
| double | distance, | ||
| double | slack = 1 |
||
| ) |
Get the individual particles from the passed SingletonContainer.
