| __hash__() const (defined in IMP::base::Object) | IMP::base::Object | |
| add_pair_filter(PairPredicate *obj) (defined in IMP::container::ClosePairContainer) | IMP::container::ClosePairContainer | |
| add_pair_filters(List objs) (defined in IMP::container::ClosePairContainer) | IMP::container::ClosePairContainer | |
| after_evaluate(DerivativeAccumulator *accpt) (defined in IMP::ScoreState) | IMP::ScoreState | |
| apply(const PairModifier *sm) const =0 | IMP::PairContainer | pure virtual |
| apply(const PairDerivativeModifier *sm, DerivativeAccumulator &da) const =0 | IMP::PairContainer | pure virtual |
| before_evaluate() (defined in IMP::ScoreState) | IMP::ScoreState | |
| clear_pair_filters() (defined in IMP::container::ClosePairContainer) | IMP::container::ClosePairContainer | |
| ClosePairContainer(SingletonContainerInput c, double distance, double slack=1) | IMP::container::ClosePairContainer | |
| ClosePairContainer(SingletonContainerInput c, double distance, core::ClosePairsFinder *cpf, double slack=1) | IMP::container::ClosePairContainer | |
| Constraint(Model *m, std::string name="Constraint %1%") (defined in IMP::Constraint) | IMP::Constraint | |
| ContainedIndexType typedef (defined in IMP::PairContainer) | IMP::PairContainer | |
| ContainedIndexTypes typedef (defined in IMP::PairContainer) | IMP::PairContainer | |
| ContainedType typedef (defined in IMP::PairContainer) | IMP::PairContainer | |
| ContainedTypes typedef (defined in IMP::PairContainer) | IMP::PairContainer | |
| Container(Model *m, std::string name="Container %1%") (defined in IMP::Container) | IMP::Container | protected |
| do_after_evaluate(DerivativeAccumulator *accpt) | IMP::Container | virtual |
| do_before_evaluate()=0 (defined in IMP::ScoreState) | IMP::ScoreState | protectedpure virtual |
| do_get_inputs() const =0 | IMP::ModelObject | protectedpure virtual |
| do_get_outputs() const =0 | IMP::ModelObject | protectedpure virtual |
| do_update_dependencies(const DependencyGraph &, const DependencyGraphVertexIndex &) | IMP::ModelObject | protectedvirtual |
| evaluate(const PairScore *s, DerivativeAccumulator *da) const =0 | IMP::PairContainer | pure virtual |
| evaluate_if_good(const PairScore *s, DerivativeAccumulator *da, double max) const =0 | IMP::PairContainer | pure virtual |
| get_all_possible_particles() const =0 | IMP::Container | pure virtual |
| get_contains_particle_pair(const ParticlePair &v) const =0 | IMP::PairContainer | pure virtual |
| get_has_pair_filters() const (defined in IMP::container::ClosePairContainer) | IMP::container::ClosePairContainer | |
| get_input_containers() const =0 (defined in IMP::ScoreState) | IMP::ScoreState | pure virtual |
| get_input_particles() const | IMP::Container | virtual |
| get_inputs() const (defined in IMP::ModelObject) | IMP::ModelObject | |
| get_is_changed() const | IMP::Container | virtual |
| get_is_decomposable() const | IMP::Container | virtual |
| get_model() const (defined in IMP::ModelObject) | IMP::ModelObject | |
| get_name() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_number_of_pair_filters() const (defined in IMP::container::ClosePairContainer) | IMP::container::ClosePairContainer | |
| get_number_of_particle_pairs() const | IMP::PairContainer | virtual |
| get_output_containers() const | IMP::Container | virtual |
| get_output_particles() const | IMP::Container | virtual |
| get_outputs() const (defined in IMP::ModelObject) | IMP::ModelObject | |
| get_pair_filter(unsigned int i) const (defined in IMP::container::ClosePairContainer) | IMP::container::ClosePairContainer | |
| get_pair_filters() const (defined in IMP::container::ClosePairContainer) | IMP::container::ClosePairContainer | |
| get_particle_pair(unsigned int i) const (defined in IMP::PairContainer) | IMP::PairContainer | virtual |
| get_particle_pairs() const (defined in IMP::PairContainer) | IMP::PairContainer | |
| get_slack() const (defined in IMP::container::ClosePairContainer) | IMP::container::ClosePairContainer | |
| get_type_name() const =0 | IMP::base::Object | pure virtual |
| get_version_info() const =0 | IMP::base::Object | pure virtual |
| IMP_IMPLEMENT_PAIR_CONTAINER(ClosePairContainer) (defined in IMP::container::ClosePairContainer) | IMP::container::ClosePairContainer | |
| ModelObject(Model *m, std::string name) (defined in IMP::ModelObject) | IMP::ModelObject | |
| Object(std::string name) (defined in IMP::base::Object) | IMP::base::Object | protected |
| pair_filters_begin() (defined in IMP::container::ClosePairContainer) | IMP::container::ClosePairContainer | |
| pair_filters_begin() const (defined in IMP::container::ClosePairContainer) | IMP::container::ClosePairContainer | |
| pair_filters_end() (defined in IMP::container::ClosePairContainer) | IMP::container::ClosePairContainer | |
| pair_filters_end() const (defined in IMP::container::ClosePairContainer) | IMP::container::ClosePairContainer | |
| PairContainer(Model *m, std::string name="PairContainer %1%") (defined in IMP::PairContainer) | IMP::PairContainer | protected |
| remove_pair_filter(PairPredicate *d) (defined in IMP::container::ClosePairContainer) | IMP::container::ClosePairContainer | |
| remove_pair_filters(List d) (defined in IMP::container::ClosePairContainer) | IMP::container::ClosePairContainer | |
| remove_pair_filters_if(const F &f) (defined in IMP::container::ClosePairContainer) | IMP::container::ClosePairContainer | |
| reserve_pair_filters(unsigned int sz) (defined in IMP::container::ClosePairContainer) | IMP::container::ClosePairContainer | |
| ScoreState(Model *m, std::string name="ScoreState %1%") (defined in IMP::ScoreState) | IMP::ScoreState | |
| set_check_level(CheckLevel l) | IMP::base::Object | |
| set_is_changed(bool tf) | IMP::Container | protected |
| set_log_level(LogLevel l) | IMP::base::Object | |
| set_name(std::string name) (defined in IMP::base::Object) | IMP::base::Object | |
| set_pair_filters(List ps) (defined in IMP::container::ClosePairContainer) | IMP::container::ClosePairContainer | |
| set_pair_filters_order(List ps) (defined in IMP::container::ClosePairContainer) | IMP::container::ClosePairContainer | |
| set_slack(double s) (defined in IMP::container::ClosePairContainer) | IMP::container::ClosePairContainer | |
| set_was_used(bool tf) const | IMP::base::Object | |
| show(std::ostream &out=std::cout) const (defined in IMP::base::Object) | IMP::base::Object | |
| update_dependencies(const DependencyGraph &dg, const DependencyGraphVertexIndex &index) | IMP::ModelObject | protected |
