 |
A container which keeps a set of pairs that connect a set of spheres.
This container is for implementing connectivity when
The contents of this container are a set of pairs defining a tree over the spheres in the supplied SingletonContainer. This set of edges has the property that
It is significantly more efficient than the ConnectivityRestraint but less flexible.
Examples: connectivity
Inheritance diagram for IMP::container::ConnectingPairContainer:Public Member Functions | |
| ConnectingPairContainer (SingletonContainer *sc, double error) | |
| IMP_IMPLEMENT_PAIR_CONTAINER (ConnectingPairContainer) | |
| Public Member Functions inherited from IMP::PairContainer | |
| virtual void | apply (const PairModifier *sm) const =0 |
| Apply a SingletonModifier to the contents. | |
| virtual void | apply (const PairDerivativeModifier *sm, DerivativeAccumulator &da) const =0 |
| Apply a SingletonModifier to the contents. | |
| virtual double | evaluate (const PairScore *s, DerivativeAccumulator *da) const =0 |
| Evaluate a score on the contents. | |
| virtual double | evaluate_if_good (const PairScore *s, DerivativeAccumulator *da, double max) const =0 |
| Evaluate a score on the contents. | |
| virtual bool | get_contains_particle_pair (const ParticlePair &v) const =0 |
| virtual unsigned int | get_number_of_particle_pairs () const |
| return the number of Pairs in the container | |
| virtual ParticlePair | get_particle_pair (unsigned int i) const |
| ParticlePairsTemp | get_particle_pairs () const |
| Public Member Functions inherited from IMP::Container | |
| virtual void | do_after_evaluate (DerivativeAccumulator *accpt) |
| Reset changed status. | |
| virtual ParticlesTemp | get_all_possible_particles () const =0 |
| Get contained particles. | |
| virtual ParticlesTemp | get_input_particles () const |
| Return get_all_possible_particles() | |
| virtual bool | get_is_changed () const |
| virtual bool | get_is_decomposable () const |
| virtual ContainersTemp | get_output_containers () const |
| Containers don't have output. | |
| virtual ParticlesTemp | get_output_particles () const |
| Containers don't have output. | |
| Public Member Functions inherited from IMP::Constraint | |
| Constraint (Model *m, std::string name="Constraint %1%") | |
| Public Member Functions inherited from IMP::ScoreState | |
| ScoreState (Model *m, std::string name="ScoreState %1%") | |
| void | after_evaluate (DerivativeAccumulator *accpt) |
| void | before_evaluate () |
| virtual ContainersTemp | get_input_containers () const =0 |
| Public Member Functions inherited from IMP::ModelObject | |
| ModelObject (Model *m, std::string name) | |
| ModelObjectsTemp | get_inputs () const |
| Model * | get_model () const |
| ModelObjectsTemp | get_outputs () const |
| Public Member Functions inherited from IMP::base::Object | |
| std::size_t | __hash__ () const |
| virtual std::string | get_type_name () const =0 |
| Return a string identifying the type of the object. | |
| virtual IMP::base::VersionInfo | get_version_info () const =0 |
| Get information about the module and version of the object. | |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Additional Inherited Members | |
| Public Types inherited from IMP::PairContainer | |
| typedef ParticleIndexPair | ContainedIndexType |
| typedef ParticleIndexPairs | ContainedIndexTypes |
| typedef ParticlePair | ContainedType |
| typedef ParticlePairsTemp | ContainedTypes |
| Protected Member Functions inherited from IMP::PairContainer | |
| PairContainer (Model *m, std::string name="PairContainer %1%") | |
| Protected Member Functions inherited from IMP::Container | |
| Container (Model *m, std::string name="Container %1%") | |
| void | set_is_changed (bool tf) |
| This will be reset at the end of evaluate. | |
| IMP::container::ConnectingPairContainer::ConnectingPairContainer | ( | SingletonContainer * | sc, |
| double | error | ||
| ) |
For efficiency, the set of edges is only updated occasionally. The error parameter determines how far particles need to move before the set of edges is updated.
