Detailed Description

Stores a set of PairContainers.

The input sets must be disjoint. This can change if there is demand for it.

Note:: The maintenance of the invariant is done by an associated IMP::Constraint. As a result, the state is only guaranteed to be correct either during model evaluation, or immediately following model evaluation before any particles have been changed.

Inheritance diagram for IMP::container::PairContainerSet:

Public Member Functions
	PairContainerSet (Model *m, std::string name="PairContainerSet %1%")
	Construct and empty set.
	PairContainerSet (const PairContainersTemp &pc, std::string name="PairContainerSet %1%")
void	apply (const PairModifier *sm) const
	Apply a SingletonModifier to the contents.
void	apply (const PairDerivativeModifier *sm, DerivativeAccumulator &da) const
	Apply a SingletonModifier to the contents.
double	evaluate (const PairScore s, DerivativeAccumulator da) const
	Evaluate a score on the contents.
double	evaluate_if_good (const PairScore s, DerivativeAccumulator da, double max) const
	Evaluate a score on the contents.
ParticlesTemp	get_all_possible_particles () const
	Get contained particles.
bool	get_contains_particle_pair (const ParticlePair &) const
bool	get_is_changed () const
template<class SM >
void	template_apply (const SM *sm, DerivativeAccumulator &da) const
template<class SM >
void	template_apply (const SM *sm) const
template<class SS >
double	template_evaluate (const SS s, DerivativeAccumulator da) const
template<class SS >
double	template_evaluate_if_good (const SS s, DerivativeAccumulator da, double max) const
Public Member Functions inherited from IMP::PairContainer
virtual unsigned int	get_number_of_particle_pairs () const
	return the number of Pairs in the container
virtual ParticlePair	get_particle_pair (unsigned int i) const
ParticlePairsTemp	get_particle_pairs () const
Public Member Functions inherited from IMP::Container
virtual void	do_after_evaluate (DerivativeAccumulator *accpt)
	Reset changed status.
virtual ParticlesTemp	get_input_particles () const
	Return get_all_possible_particles()
virtual bool	get_is_decomposable () const
virtual ContainersTemp	get_output_containers () const
	Containers don't have output.
virtual ParticlesTemp	get_output_particles () const
	Containers don't have output.
Public Member Functions inherited from IMP::Constraint
	Constraint (Model *m, std::string name="Constraint %1%")
Public Member Functions inherited from IMP::ScoreState
	ScoreState (Model *m, std::string name="ScoreState %1%")
void	after_evaluate (DerivativeAccumulator *accpt)
void	before_evaluate ()
virtual ContainersTemp	get_input_containers () const =0
Public Member Functions inherited from IMP::ModelObject
	ModelObject (Model *m, std::string name)
ModelObjectsTemp	get_inputs () const
Model *	get_model () const
ModelObjectsTemp	get_outputs () const
Public Member Functions inherited from IMP::base::Object
std::size_t	__hash__ () const
virtual std::string	get_type_name () const =0
	Return a string identifying the type of the object.
virtual IMP::base::VersionInfo	get_version_info () const =0
	Get information about the module and version of the object.
void	set_check_level (CheckLevel l)
void	set_log_level (LogLevel l)
	Set the logging level used in this object.
void	set_was_used (bool tf) const
void	show (std::ostream &out=std::cout) const
const std::string &	get_name () const
void	set_name (std::string name)

Static Public Member Functions
static PairContainerSet *	get_from (IMP::base::Object *o)

Methods to control the nested container
This container merges a set of nested containers. To add or remove nested containers, use the methods below.
void	remove_pair_container (PairContainer *d)
template<class F >
void	remove_pair_containers_if (const F &f)
template<class List >
void	remove_pair_containers (List d)
template<class List >
void	set_pair_containers (List ps)
template<class List >
void	set_pair_containers_order (List ps)
unsigned int	add_pair_container (PairContainer *obj)
template<class List >
void	add_pair_containers (List objs)
void	clear_pair_containers ()
unsigned int	get_number_of_pair_containers () const
bool	get_has_pair_containers () const
PairContainer *	get_pair_container (unsigned int i) const
PairContainers	get_pair_containers () const
void	reserve_pair_containers (unsigned int sz)
PairContainerIterator	pair_containers_begin ()
PairContainerIterator	pair_containers_end ()
PairContainerConstIterator	pair_containers_begin () const
PairContainerConstIterator	pair_containers_end () const

Additional Inherited Members
Public Types inherited from IMP::PairContainer
typedef ParticleIndexPair	ContainedIndexType
typedef ParticleIndexPairs	ContainedIndexTypes
typedef ParticlePair	ContainedType
typedef ParticlePairsTemp	ContainedTypes
Protected Member Functions inherited from IMP::PairContainer
	PairContainer (Model *m, std::string name="PairContainer %1%")
Protected Member Functions inherited from IMP::Container
	Container (Model *m, std::string name="Container %1%")
void	set_is_changed (bool tf)
	This will be reset at the end of evaluate.

Constructor & Destructor Documentation

IMP::container::PairContainerSet::PairContainerSet	(	Model *	m,
		std::string	name = `"PairContainerSet %1%"`
	)

Construct and empty set.

Member Function Documentation

void IMP::container::PairContainerSet::apply ( const PairModifier * sm ) const

virtual

Apply a SingletonModifier to the contents.

Implements IMP::PairContainer.

void IMP::container::PairContainerSet::apply	(	const PairDerivativeModifier *	sm,
		DerivativeAccumulator &	da
	)		const

virtual

Apply a SingletonModifier to the contents.

Implements IMP::PairContainer.

double IMP::container::PairContainerSet::evaluate	(	const PairScore *	s,
		DerivativeAccumulator *	da
	)		const

virtual

Evaluate a score on the contents.

Implements IMP::PairContainer.

double IMP::container::PairContainerSet::evaluate_if_good	(	const PairScore *	s,
		DerivativeAccumulator *	da,
		double	max
	)		const

virtual

Evaluate a score on the contents.

Implements IMP::PairContainer.

ParticlesTemp IMP::container::PairContainerSet::get_all_possible_particles ( ) const

virtual

Get contained particles.

Get a list of all particles contained in this one, given that the input containers are up to date.

Implements IMP::Container.

bool IMP::container::PairContainerSet::get_contains_particle_pair ( const ParticlePair & v ) const

virtual

Note:: This function may be linear. Be aware of the complexity bounds of your particular container.

Implements IMP::PairContainer.

bool IMP::container::PairContainerSet::get_is_changed ( ) const

virtual

Return true if the container changed since the last evaluate.

Reimplemented from IMP::Container.

The documentation for this class was generated from the following file:

PairContainerSet.h

Detailed Description

Public Member Functions

Static Public Member Functions

Methods to control the nested container

Additional Inherited Members

Constructor & Destructor Documentation

Member Function Documentation