Detailed Description

Copy the derivatives from the particle to its refined particles.

See also:: DerivatvesFromRefinedSingletonModifier; CoverRefined; CentroidOfRefinedSingletonModifer An example showing a how to use such a score state to maintain a cover of the atoms of a protein by a sphere per residue.
import IMP

import IMP.core

import IMP.atom

import IMP.atom

m= IMP.Model()

prot= IMP.atom.read_pdb(IMP.core.get_example_path('example_protein.pdb'), m)

res= IMP.atom.get_by_type(prot, IMP.atom.RESIDUE_TYPE)

pr= IMP.core.ChildrenRefiner(IMP.atom.Hierarchy.get_traits())

for r in res:

# add coordinates and a radius to the residue particle

IMP.core.XYZR.setup_particle(r)

# make sure that the coordinates and the radius define a sphere

# which contains all of the leaves (atoms) of the residue

IMP.core.Cover.setup_particle(r.get_particle(), pr)

# update the coordinates of the residue particles so that they cover the atoms

m.update()

Inheritance diagram for IMP::core::DerivativesToRefined:

Public Member Functions
	DerivativesToRefined (Refiner *r, FloatKeys ks=XYZ::get_xyz_keys())
	Copy ks to the particles returned by r.
Public Member Functions inherited from IMP::SingletonDerivativeModifier
	SingletonDerivativeModifier (std::string name="SingletonModifier %1%")
virtual void	apply (Particle *, DerivativeAccumulator &da) const =0
virtual void	apply_index (Model *m, ParticleIndex v, DerivativeAccumulator &da) const
virtual void	apply_indexes (Model *m, const ParticleIndexes &o, DerivativeAccumulator &da) const
virtual ContainersTemp	get_input_containers (Particle *p) const =0
virtual ParticlesTemp	get_input_particles (Particle *p) const =0
virtual ContainersTemp	get_output_containers (Particle *p) const =0
virtual ParticlesTemp	get_output_particles (Particle *p) const =0
Public Member Functions inherited from IMP::base::Object
std::size_t	__hash__ () const
virtual std::string	get_type_name () const =0
	Return a string identifying the type of the object.
virtual IMP::base::VersionInfo	get_version_info () const =0
	Get information about the module and version of the object.
void	set_check_level (CheckLevel l)
void	set_log_level (LogLevel l)
	Set the logging level used in this object.
void	set_was_used (bool tf) const
void	show (std::ostream &out=std::cout) const
const std::string &	get_name () const
void	set_name (std::string name)

Static Public Member Functions
static DerivativesToRefined *	get_from (IMP::base::Object *o)

Additional Inherited Members
Public Types inherited from IMP::SingletonDerivativeModifier
typedef Particle *	Argument
typedef ParticleIndex	IndexArgument

Constructor & Destructor Documentation

IMP::core::DerivativesToRefined::DerivativesToRefined	(	Refiner *	r,
		FloatKeys	ks = `XYZ::get_xyz_keys()`
	)

Copy ks to the particles returned by r.

The documentation for this class was generated from the following file: