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Upper bound harmonic function (non-zero when feature > mean)
Examples: decay, custom filter, displaying ensembles, dock with crosslinks, six particles optimization, simulation, ms connectivity restraint, restrain diameter, optimize balls, connectivity restraint, incremental mc, restrain in sphere
Inheritance diagram for IMP::core::HarmonicUpperBound:Public Member Functions | |
| HarmonicUpperBound (Float mean, Float k) | |
| Public Member Functions inherited from IMP::core::Harmonic | |
| Harmonic (Float mean, Float k) | |
| Float | get_k () const |
| Float | get_mean () const |
| void | set_k (Float k) |
| Set the spring constant. | |
| void | set_mean (Float mean) |
| Set the mean of this function. | |
| Public Member Functions inherited from IMP::UnaryFunction | |
| virtual double | evaluate (double feature) const |
| Calculate score with respect to the given feature. | |
| virtual DerivativePair | evaluate_with_derivative (double feature) const |
| Calculate score and derivative with respect to the given feature. | |
| Public Member Functions inherited from IMP::base::Object | |
| std::size_t | __hash__ () const |
| virtual std::string | get_type_name () const =0 |
| Return a string identifying the type of the object. | |
| virtual IMP::base::VersionInfo | get_version_info () const =0 |
| Get information about the module and version of the object. | |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Static Public Member Functions | |
| static HarmonicUpperBound * | get_from (IMP::base::Object *o) |
| Static Public Member Functions inherited from IMP::core::Harmonic | |
| static Float | get_k_from_standard_deviation (Float sd, Float t=297.15) |
| Return the k to use for a given Gaussian standard deviation. | |
Create with the given mean and the spring constant k
