IMP::em2d::Image Class Reference

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Detailed Description

2D Electron Microscopy images in IMP

Inheritance diagram for IMP::em2d::Image:

List of all members.

Public Member Functions
	Image (int rows, int cols)
	Create image of the proper size.
	Image (String filename, const ImageReaderWriter *reader)
	Create the image reading from a file.
void	destroyed_msg ()
cv::Mat &	get_data ()
	Access to the matrix of data.
em::ImageHeader &	get_header ()
	Access to the header.
FloatRange	get_min_and_max_values () const
String	get_name () const
double	operator() (int i, int j) const
void	read (String filename, const ImageReaderWriter *reader)
void	set_data (const cv::Mat &mat)
	Sets the entire matrix of data.
void	set_name (const String &name)
void	set_size (int rows, int cols)
void	set_size (Image *img)
	Resize to the same size of the parameter image.
void	set_value (double val)
void	set_value (int i, int j, double val)
void	set_zeros ()
void	show (std::ostream &out) const
void	update_header ()
void	write (const String &filename, const ImageReaderWriter *writer)
Public Member Functions inherited from IMP::base::Object
std::size_t	__hash__ () const
virtual std::string	get_type_name () const =0
	Return a string identifying the type of the object.
virtual IMP::base::VersionInfo	get_version_info () const =0
	Get information about the module and version of the object.
void	set_check_level (CheckLevel l)
void	set_log_level (LogLevel l)
	Set the logging level used in this object.
void	set_was_used (bool tf) const
void	set_name (std::string name)

Static Public Member Functions
static Image *	get_from (IMP::base::Object *o)
	Define the basic things needed by any Object.

Protected Member Functions
void	set_defaults ()
void	set_size_data (int rows, int cols)
Protected Member Functions inherited from IMP::base::Object
	Object (std::string name)

Protected Attributes
cv::Mat	data_
	Matrix with the data for the image.
em::ImageHeader	header_
	Header for the image with all the pertinent information.
String	name_
	Name of the image. Frequently it will be the name of the file.

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Constructor & Destructor Documentation

IMP::em2d::Image::Image	(	int	rows,
		int	cols
	)

Create image of the proper size.

IMP::em2d::Image::Image	(	String	filename,
		const ImageReaderWriter *	reader
	)

Create the image reading from a file.

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Member Function Documentation

cv::Mat& IMP::em2d::Image::get_data

(

)

Access to the matrix of data.

static Image* IMP::em2d::Image::get_from ( IMP::base::Object *  o )

static

Define the basic things needed by any Object.

em::ImageHeader& IMP::em2d::Image::get_header

(

)

Access to the header.

void IMP::em2d::Image::read	(	String	filename,
		const ImageReaderWriter *	reader
	)

Reads and casts the image from the file (the image matrix of data must be stored as floats)

void IMP::em2d::Image::set_data

(

const cv::Mat &

mat

)

Sets the entire matrix of data.

void IMP::em2d::Image::set_size

(

Image *

img

)

Resize to the same size of the parameter image.

void IMP::em2d::Image::update_header

(

)

Adjusts the information of the imager header taking into account the dimensions of the data and setting the time, date, type, etc ...

void IMP::em2d::Image::write	(	const String &	filename,
		const ImageReaderWriter *	writer
	)

Writes the image to a file (the image matrix of data is stored as floats when writing)

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Member Data Documentation

cv::Mat IMP::em2d::Image::data_

protected

Matrix with the data for the image.

em::ImageHeader IMP::em2d::Image::header_

protected

Header for the image with all the pertinent information.

String IMP::em2d::Image::name_

protected

Name of the image. Frequently it will be the name of the file.

Reimplemented from IMP::base::Object.

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The documentation for this class was generated from the following file:

• Image.h