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Apply a lognormal distance restraint between two particles.
Marginal of the lognormal model for NOEs where only 
was marginalized, and 
was set to 1. Since the restraint is complicated, pass individual particles to add_contribution() command.
![\[p(D|X,I) = \left(\sum_{i=1}^N \log^2\left(\frac{V_i^{exp}} {d_i^{-6}(X)}\right)\right)^{-\frac{N}{2}} \]](form_60.png)
The source code is as follows:
Inheritance diagram for IMP::isd::MarginalHBondRestraint:Public Member Functions | |
| MarginalHBondRestraint () | |
| Create the restraint. | |
| void | add_contribution (Particle *p1, Particle *p2, double Iexp) |
| void | add_contribution (PairContainer *pc, double Iexp) |
| double | get_logsquares () const |
| unsigned | get_number_of_contributions () const |
| double | get_probability () const |
| Public Member Functions inherited from IMP::isd::ISDRestraint | |
| def | __init__ |
| ISDRestraint (std::string name) | |
| Public Member Functions inherited from IMP::Restraint | |
| Restraint (Model *m, std::string name) | |
| Restraint * | create_current_decomposition () const |
| Decompose this restraint into constituent terms for the current conf. | |
| Restraint * | create_decomposition () const |
| Decompose this restraint into constituent terms. | |
| double | evaluate (bool calc_derivs) const |
| Return the score for this restraint for the current state of the model. | |
| double | evaluate_if_below (bool calc_derivatives, double max) const |
| See Model::evaluate_with_maximum() | |
| double | evaluate_if_good (bool calc_derivatives) const |
| See Model::evaluate_if_good() | |
| double | get_last_score () const |
| bool | get_was_good () const |
| virtual double | unprotected_evaluate (DerivativeAccumulator *) const =0 |
| virtual double | unprotected_evaluate_if_good (DerivativeAccumulator *da, double max) const |
| virtual double | unprotected_evaluate_if_below (DerivativeAccumulator *da, double max) const |
| virtual ContainersTemp | get_input_containers () const =0 |
| virtual ParticlesTemp | get_input_particles () const =0 |
| void | set_weight (Float weight) |
| Float | get_weight () const |
| double | get_maximum_score () const |
| void | set_maximum_score (double s) |
| Public Member Functions inherited from IMP::ModelObject | |
| ModelObject (Model *m, std::string name) | |
| ModelObjectsTemp | get_inputs () const |
| Model * | get_model () const |
| ModelObjectsTemp | get_outputs () const |
| Public Member Functions inherited from IMP::base::Object | |
| std::size_t | __hash__ () const |
| virtual std::string | get_type_name () const =0 |
| Return a string identifying the type of the object. | |
| virtual IMP::base::VersionInfo | get_version_info () const =0 |
| Get information about the module and version of the object. | |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Static Public Member Functions | |
| static MarginalHBondRestraint * | get_from (IMP::base::Object *o) |
| IMP::isd::MarginalHBondRestraint::MarginalHBondRestraint | ( | ) |
Create the restraint.
Restraints should store the particles they are to act on, preferably in a Singleton or PairContainer as appropriate.
|
static |
This macro declares the basic needed methods: evaluate and show
