Modify a set of continuous variables using a MD simulation.
- See also:
- MonteCarlo
Public Member Functions |
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| MolecularDynamicsMover (Model *m, unsigned nsteps=100, Float timestep=1.) |
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MolecularDynamics * | get_md () const |
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unsigned | get_number_of_md_steps () const |
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void | set_number_of_md_steps (unsigned nsteps) |
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| Mover (Model *m, std::string name) |
| Optimizer * | get_optimizer () const |
| | Get a pointer to the optimizer which has this mover.
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| virtual ParticlesTemp | get_output_particles () const =0 |
| | Return the set of particles over which moves can be proposed.
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| virtual ParticlesTemp | propose_move (Float size)=0 |
| | propose a modification
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| virtual void | reset_move ()=0 |
| | Roll back any changes made to the Particles.
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| ModelObject (Model *m, std::string name) |
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ModelObjectsTemp | get_inputs () const |
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Model * | get_model () const |
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ModelObjectsTemp | get_outputs () const |
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std::size_t | __hash__ () const |
| virtual std::string | get_type_name () const =0 |
| | Return a string identifying the type of the object.
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| virtual IMP::base::VersionInfo | get_version_info () const =0 |
| | Get information about the module and version of the object.
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| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| | Set the logging level used in this object.
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| void | set_was_used (bool tf) const |
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void | show (std::ostream &out=std::cout) const |
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const std::string & | get_name () const |
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void | set_name (std::string name) |