 |
Super class for IMP test cases.
Inheritance diagram for IMP.test.TestCase:Public Member Functions | |
| def | assertClassNames |
| Check that all the classes in the module follow the imp naming conventions. | |
| def | assertFunctionNames |
| Check that all the functions in the module follow the imp naming conventions. | |
| def | assertShow |
| Check that all the classes in modulename have a show method. | |
| def | assertValueObjects |
| def | assertXYZDerivativesInTolerance |
| Assert that x,y,z analytical derivatives match numerical within a tolerance, or a percentage (of the analytical value), whichever is larger. | |
| def | check_unary_function_deriv |
| Check the unary function func's derivatives against numerical approximations between lb and ub. | |
| def | check_unary_function_min |
| Make sure that the minimum of the unary function func over the range between lb and ub is at expected_fmin. | |
| def | create_particles_in_box |
| Create a bunch of particles in a box. | |
| def | create_point_particle |
| Make a particle with optimizable x, y and z attributes, and add it to the model. | |
| def | failure_probability |
| Estimate how like a given block of code is to raise an AssertionError. | |
| def | get_input_file_name |
| Get the full name of an input file in the top-level test directory. | |
| def | get_magnitude |
| def | get_tmp_file_name |
| Get the full name of an output file in the build/tmp directory. | |
| def | open_input_file |
| Open and return an input file in the top-level test directory. | |
| def | particle_distance |
| Return distance between two given particles. | |
| def | probabilistic_test |
| Help handle a test which is expected to fail some fraction of the time. | |
| def | randomize_particles |
| Randomize the xyz coordinates of a list of particles. | |
| def | run_example |
| Run the named example script. | |
| def | setUp |
| def | tearDown |
Public Attributes | |
| start_time | |
| words | |
| def IMP.test.TestCase.assertClassNames | ( | self, | |
| module, | |||
| exceptions, | |||
| words | |||
| ) |
Check that all the classes in the module follow the imp naming conventions.
| def IMP.test.TestCase.assertFunctionNames | ( | self, | |
| module, | |||
| exceptions, | |||
| words | |||
| ) |
Check that all the functions in the module follow the imp naming conventions.
| def IMP.test.TestCase.assertShow | ( | self, | |
| modulename, | |||
| exceptions | |||
| ) |
Check that all the classes in modulename have a show method.
| def IMP.test.TestCase.assertXYZDerivativesInTolerance | ( | self, | |
| model, | |||
| xyz, | |||
tolerance = 0, |
|||
percentage = 0 |
|||
| ) |
Assert that x,y,z analytical derivatives match numerical within a tolerance, or a percentage (of the analytical value), whichever is larger.
| def IMP.test.TestCase.check_unary_function_deriv | ( | self, | |
| func, | |||
| lb, | |||
| ub, | |||
| step | |||
| ) |
Check the unary function func's derivatives against numerical approximations between lb and ub.
| def IMP.test.TestCase.check_unary_function_min | ( | self, | |
| func, | |||
| lb, | |||
| ub, | |||
| step, | |||
| expected_fmin | |||
| ) |
Make sure that the minimum of the unary function func over the range between lb and ub is at expected_fmin.
| def IMP.test.TestCase.create_particles_in_box | ( | self, | |
| model, | |||
num = 10, |
|||
lb = [0, |
|||
ub = [10 |
|||
| ) |
Create a bunch of particles in a box.
| def IMP.test.TestCase.create_point_particle | ( | self, | |
| model, | |||
| x, | |||
| y, | |||
| z | |||
| ) |
Make a particle with optimizable x, y and z attributes, and add it to the model.
| def IMP.test.TestCase.failure_probability | ( | self, | |
| testcall | |||
| ) |
Estimate how like a given block of code is to raise an AssertionError.
| def IMP.test.TestCase.get_input_file_name | ( | self, | |
| filename | |||
| ) |
Get the full name of an input file in the top-level test directory.
| def IMP.test.TestCase.get_tmp_file_name | ( | self, | |
| filename | |||
| ) |
Get the full name of an output file in the build/tmp directory.
| def IMP.test.TestCase.open_input_file | ( | self, | |
| filename, | |||
mode = 'rb' |
|||
| ) |
Open and return an input file in the top-level test directory.
| def IMP.test.TestCase.particle_distance | ( | self, | |
| p1, | |||
| p2 | |||
| ) |
Return distance between two given particles.
| def IMP.test.TestCase.probabilistic_test | ( | self, | |
| testcall, | |||
| chance_of_failure | |||
| ) |
Help handle a test which is expected to fail some fraction of the time.
The test is run multiple times and an exception is thrown only if it fails too many times.
| def IMP.test.TestCase.randomize_particles | ( | self, | |
| particles, | |||
| deviation | |||
| ) |
Randomize the xyz coordinates of a list of particles.
| def IMP.test.TestCase.run_example | ( | self, | |
| filename | |||
| ) |
Run the named example script.
A dictionary of all the script's global variables is returned. This can be queried in a test case to make sure the example performed correctly.
