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_
A
Diffusion
(
IMP::atom
)
IOException
(
RMF
)
ParticlesDummyRestraint
(
IMP::em2d
)
Simplex
(
IMP::gsl
)
Dihedral
(
IMP::atom
)
ISDRestraint
(
IMP::isd
)
ParticleStates
(
IMP::domino
)
Simulator
(
IMP::atom
)
AbstractGrid
(IMP::isd::AbstractGrid)
DihedralRestraint
(
IMP::core
)
J
ParticleStatesTable
(
IMP::domino
)
SingletonConstraint
(
IMP::core
)
AbstractService
(IMP::isd::AbstractGrid)
DihedralSingletonScore
(
IMP::atom
)
ParticleTuple
(
IMP
)
SingletonContainer
(
IMP
)
Refiner::Accessor
(
IMP
)
DirectorObjectChecker
(
IMP::test
)
JeffreysRestraint
(
IMP::isd
)
PartitionalClustering
(
IMP::statistics
)
SingletonContainerSet
(
IMP::container
)
ALIGN2D_PREPROCESSING
DiscreteSampler
(
IMP::domino
)
JournalArticle
(
RMF
)
PartitionalClusteringWithCenter
(
IMP::statistics
)
SingletonContainerStatistics
(
IMP::container
)
AllBipartitePairContainer
(
IMP::container
)
DisjointSetsSubsetFilterTable
(
IMP::domino
)
JournalArticleConst
(
RMF
)
PDBSelector
(
IMP::atom
)
SingletonDerivativeFunctor
(
IMP
)
AllMol2Selector
(
IMP::atom
)
Display
(
IMP::restrainer
)
JournalArticleConstFactory
(
RMF
)
PermutationStates
(
IMP::domino
)
SingletonDerivativeModifier
(
IMP
)
AllPairContainer
(
IMP::container
)
DistanceFilterTable
(
IMP::em2d
)
JournalArticleFactory
(
RMF
)
piecewise_linear_distribution
(
IMP::compatibility
)
SingletonFilter
(
IMP
)
AllPDBSelector
(
IMP::atom
)
DistanceMask
(
IMP::em
)
JPGImageReaderWriter
(
IMP::em2d
)
Pipe
(IMP::isd::utils)
SingletonFunctor
(
IMP
)
AmbiguousNOERestraint
(
IMP::isd
)
DistancePairScore
(
IMP::core
)
K
PivyWriter
(
IMP
)
SingletonGeometry
(
IMP::display
)
AmbiguousRestraint
(
IMP::isd
)
DistanceRestraint
(
IMP::core
)
Plane3D
(
IMP::algebra
)
SingletonModifier
(
IMP
)
Analysis
(IMP::isd::Analysis)
DistanceToSingletonScore
KClosePairsPairScore
(
IMP::core
)
Pointer
(
IMP::base
)
SingletonPredicate
(
IMP
)
AndPDBSelector
(
IMP::atom
)
Distribution
(
IMP::saxs
)
KernelParameters
(
IMP::em
)
PointGeometry
(
IMP::display
)
SingletonRestraint
(
IMP::core
)
Angle
(
IMP::atom
)
Domain
(
IMP::atom
)
Key
(
IMP
)
PolarResamplingParameters
(
IMP::em2d
)
SingletonsConstraint
(
IMP::container
)
AngleRestraint
(
IMP::core
)
DominoSampler
(
IMP::domino
)
Key
(
RMF
)
PolygonGeometry
(
IMP::display
)
SingletonScore
(
IMP
)
AngleSingletonScore
(
IMP::atom
)
DopePairScore
(
IMP::atom
)
L
PPDBSelector
(
IMP::atom
)
SingletonScoreRestraint
(
IMP
)
AngleTripletScore
(
IMP::core
)
DummyRestraint
(
IMP::em2d
)
PredicatePairsRestraint
(
IMP::container
)
SingletonsEventOptimizerState
(
IMP::container
)
ApplicationTestCase
(
IMP::test
)
DynamicNearestNeighbor3D
(
IMP::algebra
)
LabelGeometry
(
IMP::display
)
PredicateQuadsRestraint
(
IMP::container
)
SingletonsGeometry
(
IMP::display
)
AssemblyHeader
(
IMP::multifit
)
E
LangevinThermostatOptimizerState
(
IMP::atom
)
PredicateSingletonScore
(
IMP::core
)
SingletonsOptimizerState
(
IMP::container
)
Assignment
(
IMP::domino
)
LeavesRefiner
(
IMP::core
)
PredicateSingletonsRestraint
(
IMP::container
)
SingletonsRestraint
(
IMP::container
)
AssignmentContainer
(
IMP::domino
)
EdgePairGeometry
(
IMP::core
)
LennardJones
(
IMP::atom
)
PredicateTripletsRestraint
(
IMP::container
)
SingletonsScoreRestraint
(
IMP
)
AssignmentsTable
(
IMP::domino
)
EdgePairsGeometry
(
IMP::core
)
LennardJonesPairScore
(
IMP::atom
)
PrincipalComponentAnalysisD
(
IMP::algebra
)
Slave
(
IMP::parallel
)
Atom
(
IMP::atom
)
ElementTable
(
IMP::atom
)
LessPairBySecond
(
IMP::em2d
)
ProbabilisticSubsetFilterTable
(
IMP::domino
)
SlaveArray
(
IMP::parallel
)
ATOMPDBSelector
(
IMP::atom
)
Ellipsoid3D
(
IMP::algebra
)
Linear
(
IMP::core
)
Profile
(
IMP::saxs
)
SlidingPriorRestraint
(
IMP::isd
)
AtomType
EllipsoidGeometry
(
IMP::display
)
Linear1DFunction
(
IMP::isd
)
ProjectionFinder
(
IMP::em2d
)
SmoothingFunction
(
IMP::atom
)
AttributeSingletonPredicate
(
IMP::core
)
Em2DRestraint
(
IMP::em2d
)
LinearFit2D
(
IMP::algebra
)
ProjectionMask
(
IMP::em2d
)
SoftCylinderPairScore
(
IMP::misc
)
AttributeSingletonScore
EM2DScore
(
IMP::em2d
)
ListAssignmentContainer
(
IMP::domino
)
ProjectionParameters
(
IMP::em2d
)
SoftSpherePairScore
(
IMP::core
)
B
Embedding
(
IMP::statistics
)
ListAssignmentsTable
(
IMP::domino
)
ProjectionParametersScoreState
(
IMP::em2d
)
SolventAccessibleSurface
(
IMP::saxs
)
Entry
ListPairContainer
(
IMP::container
)
ProjectionStates
(
IMP::em2d
)
SparseGrid3D
(
IMP::algebra
)
Ball
(
RMF
)
Entry
(IMP::isd::Entry)
ListQuadContainer
(
IMP::container
)
ProteinLigandAtomPairScore
(
IMP::atom
)
SparseGridStorageD
(
IMP::algebra::grids
)
BallConst
(
RMF
)
EnvelopePenetrationRestraint
(
IMP::em
)
ListSingletonContainer
(
IMP::container
)
ProteinLigandRestraint
(
IMP::atom
)
SparseUnboundedGrid3D
(
IMP::algebra
)
BallConstFactory
(
RMF
)
EqualitySubsetFilterTable
(
IMP::domino
)
ListSubsetFilterTable
(
IMP::domino
)
PymolWriter
(
IMP::display
)
SparseUnboundedGridD
(
IMP::algebra
)
BallFactory
(
RMF
)
EquivalenceAndExclusionSubsetFilterTable
(
IMP::domino
)
ListTripletContainer
(
IMP::container
)
PyroGrid
SparseUnboundedIntGrid3D
BallMover
(
IMP::core
)
EquivalenceSubsetFilterTable
(
IMP::domino
)
LocalSlave
(
IMP::parallel
)
PyroHandler
(IMP::isd::PyroGrid)
SphereD
(
IMP::algebra
)
BerendsenThermostatOptimizerState
(
IMP::atom
)
Error
(
IMP::parallel
)
LogEmbeddingD
(
IMP::algebra::grids
)
PyroProxy
(IMP::isd::PyroGrid)
SphereDistancePairScore
(
IMP::core
)
BildWriter
(
IMP::display
)
EuclideanVectorKDMetric
(
IMP::algebra
)
logfile
(IMP::isd::logfile)
PythonDirectedGraph
(
IMP
)
SphereDistanceToSingletonScore
(
IMP::core
)
BinormalTerm
(
IMP::modeller
)
EventException
(
IMP::base
)
LogicalORRestraint
(
IMP::isd
)
Q
SphereGeometry
(
IMP::display
)
BivariateFunction
(
IMP::isd
)
EventPairsOptimizerState
(
IMP::container
)
LognormalRestraint
(
IMP::isd
)
SpherePatch3D
(
IMP::algebra
)
Bond
(
IMP::atom
)
EventQuadsOptimizerState
(
IMP::container
)
LogPairScore
(
IMP::misc
)
QuadConstraint
(
IMP::core
)
SphericalVector3D
(
IMP::algebra
)
Bonded
(
IMP::atom
)
EventSingletonsOptimizerState
(
IMP::container
)
LowestRefinedPairScore
(
IMP::misc
)
QuadContainer
(
IMP
)
SpiderHeader
(
IMP::em
)
BondedPairFilter
(
IMP::atom
)
EventTripletsOptimizerState
(
IMP::container
)
M
QuadContainerSet
(
IMP::container
)
SpiderImageReaderWriter
(
IMP::em2d
)
BondEndpointsRefiner
(
IMP::atom
)
ExampleComplexRestraint
(
IMP::example
)
QuadContainerStatistics
(
IMP::container
)
SpiderMapReaderWriter
(
IMP::em
)
BondGeometry
(
IMP::atom
)
ExampleConstraint
(
IMP::example
)
Main
(
IMP::restrainer
)
QuadDerivativeFunctor
(
IMP
)
StateAdaptor
(
IMP::misc
)
BondGraph
(
IMP::atom
)
ExampleDecorator
(
IMP::example
)
MaintainScaleOrderConstraint
(
IMP::isd
)
QuadDerivativeModifier
(
IMP
)
StatisticalPairScore
(
IMP::core
)
BondPairContainer
(
IMP::atom
)
ExamplePairScore
(IMP::examplesystemlocal)
Manager
(
IMP::parallel
)
QuadFilter
(
IMP
)
Statistics
(IMP::isd::Statistics)
BondsGeometry
(
IMP::atom
)
ExamplePairScore
(
IMP::example
)
map
(
IMP::compatibility
)
QuadFunctor
(
IMP
)
Statistics
BondSingletonScore
(
IMP::atom
)
ExampleRefCounted
(
IMP::example
)
MapReaderWriter
(
IMP::em
)
QuadModifier
(
IMP
)
SteepestDescent
(
IMP::core
)
BoundedGridStorageD
(
IMP::algebra::grids
)
ExampleRestraint
(IMP::examplesystemlocal)
MarginalHBondRestraint
(
IMP::isd
)
QuadPredicate
(
IMP
)
StereochemistryPairFilter
(
IMP::atom
)
BoundingBox2D
ExampleRestraint
(
IMP::example
)
MarginalNOERestraint
(
IMP::isd
)
QuadraticClosePairsFinder
(
IMP::core
)
Subset
(
IMP::domino
)
BoundingBox3DSingletonScore
ExampleSingletonModifier
(IMP::examplesystemlocal)
MasksManager
(
IMP::em2d
)
QuadRestraint
(
IMP::core
)
SubsetFilter
(
IMP::domino
)
BoundingBoxD
(
IMP::algebra
)
ExampleSingletonModifier
(
IMP::example
)
Mass
(
IMP::atom
)
QuadsConstraint
(
IMP::container
)
SubsetFilterTable
(
IMP::domino
)
BoundingBoxGeometry
(
IMP::display
)
ExampleSubsetFilterTable
(
IMP::example
)
MatchTemplateResult
(
IMP::em2d
)
QuadScore
(
IMP
)
SurfaceMeshGeometry
(
IMP::display
)
BoxSweepClosePairsFinder
(
IMP::core
)
ExampleTemplateClassD
(
IMP::example
)
Matrix2D
(
IMP::algebra
)
QuadScoreRestraint
(
IMP
)
SurfaceShellDensityMap
(
IMP::em
)
BranchAndBoundAssignmentsTable
(
IMP::domino
)
ExampleUnaryFunction
(
IMP::example
)
Matrix3D
(
IMP::algebra
)
QuadsEventOptimizerState
(
IMP::container
)
Switching
(
IMP::isd
)
BranchAndBoundSampler
(
IMP::domino
)
Exception
(
IMP::base
)
MaxVectorKDMetric
(
IMP::algebra
)
QuadsOptimizerState
(
IMP::container
)
T
BrownianDynamics
(
IMP::atom
)
Exception
(
RMF
)
MCCGSampler
(
IMP::core
)
QuadsRestraint
(
IMP::container
)
C
ExcludedVolumeRestraint
(
IMP::core
)
md_parameters
(modeller_refinement)
QuadsScoreRestraint
(
IMP
)
TableRefiner
(
IMP::core
)
ExclusionSubsetFilterTable
(
IMP::domino
)
Metric
(
IMP::statistics
)
QuasiNewton
(
IMP::gsl
)
TALOSReader
(IMP::isd::TALOSReader)
CAlphaPDBSelector
(
IMP::atom
)
ExclusiveConsecutivePairContainer
(
IMP::container
)
MinimumPairRestraint
(
IMP::container
)
R
TALOSRestraint
(
IMP::isd
)
CategoryD
(
RMF
)
ExclusiveConsecutivePairFilter
(
IMP::container
)
MinimumPairScore
(
IMP::container
)
TestCase
(
IMP::test
)
CBetaPDBSelector
(
IMP::atom
)
ExtendedGridIndexD
(
IMP::algebra::grids
)
MinimumQuadRestraint
(
IMP::container
)
RadialDistributionFunction
(
IMP::saxs
)
TestRefiner
(
IMP::test
)
CenteredMat
(
IMP::em2d
)
F
MinimumQuadScore
(
IMP::container
)
RadiusDependentKernelParameters
(
IMP::em
)
TextInput
(
IMP::base
)
Centroid
(
IMP::core
)
MinimumRestraint
(
IMP::core
)
RadiusOfGyrationRestraint
(
IMP::multifit
)
TextOutput
(
IMP::base
)
CentroidOfRefined
(
IMP::core
)
FailureHandler
(
IMP::base
)
MinimumRestraintScoreSubsetFilter
(
IMP::domino
)
RadiusOfGyrationRestraint
(
IMP::saxs
)
TextWriter
(
IMP::display
)
Chain
(
IMP::atom
)
FailureHandlerBase
(
IMP::base
)
MinimumRestraintScoreSubsetFilterTable
(
IMP::domino
)
RangeViewAssignmentContainer
(
IMP::domino
)
Transform
(
IMP::core
)
ChainPDBSelector
(
IMP::atom
)
FIFOBasedRemoteObject
(IMP::isd::FIFOBasedGrid)
MinimumSingletonRestraint
(
IMP::container
)
ReadAssignmentContainer
(
IMP::domino
)
Transformation2D
(
IMP::algebra
)
Charged
(
IMP::atom
)
FileBasedGrid
MinimumSingletonScore
(
IMP::container
)
ReadHDF5AssignmentContainer
(
IMP::domino
)
Transformation3D
(
IMP::algebra
)
CHARMMAtom
(
IMP::atom
)
FileBasedRemoteObject
(IMP::isd::FileBasedGrid)
MinimumTripletRestraint
(
IMP::container
)
RecursiveAssignmentsTable
(
IMP::domino
)
TransformationAndReflectionSymmetry
(
IMP::core
)
CHARMMAtomTopology
(
IMP::atom
)
FileConstHandle
(
RMF
)
MinimumTripletScore
(
IMP::container
)
RecursivePartitionalClusteringEmbedding
(
IMP::statistics
)
TransformationSymmetry
(
IMP::core
)
CHARMMBondEndpoint
(
IMP::atom
)
FileHandle
(
RMF
)
Model
(
IMP
)
RecursivePartitionalClusteringMetric
(
IMP::statistics
)
TransformedDistancePairScore
(
IMP::core
)
CHARMMBondParameters
(
IMP::atom
)
FilterGeometry
(
IMP::display
)
ModelException
(
IMP::base
)
RecursiveStates
(
IMP::domino
)
Triangle3D
(
IMP::algebra
)
CHARMMConnection
(
IMP::atom
)
Fine2DRegistrationRestraint
(
IMP::em2d
)
ModelException
RefCountChecker
(
IMP::test
)
TriangleGeometry
(
IMP::display
)
CHARMMDihedralParameters
(
IMP::atom
)
FitRestraint
(
IMP::em
)
ModellerRestraints
(
IMP::modeller
)
RefCounted
(
IMP::base
)
TripletConstraint
(
IMP::core
)
CHARMMIdealResidueTopology
(
IMP::atom
)
FittingSolutionRecord
(
IMP::multifit
)
ModelLoader
(
IMP::modeller
)
Reference
(
IMP::core
)
TripletContainer
(
IMP
)
CHARMMInternalCoordinate
(
IMP::atom
)
FittingSolutions
(
IMP::em
)
ModifierVisitor
(
IMP::core
)
ReferenceFrame3D
(
IMP::algebra
)
TripletContainerSet
(
IMP::container
)
CHARMMParameters
(
IMP::atom
)
FixedRefiner
(
IMP::core
)
Mol2Selector
(
IMP::atom
)
ReferenceFrameGeometry
(
IMP::display
)
TripletContainerStatistics
(
IMP::container
)
CHARMMPatch
(
IMP::atom
)
FixedXYZ
(
IMP::algebra
)
MolecularDynamics
(
IMP::atom
)
RefinedPairsPairScore
(
IMP::core
)
TripletDerivativeFunctor
(
IMP
)
CHARMMResidueTopology
(
IMP::atom
)
FixedZXZ
(
IMP::algebra
)
MolecularDynamics
(
IMP::isd
)
Refiner
(
IMP
)
TripletDerivativeModifier
(
IMP
)
CHARMMResidueTopologyBase
(
IMP::atom
)
FixedZYZ
(
IMP::algebra
)
MolecularDynamicsMover
(
IMP::isd
)
Reflection3D
(
IMP::algebra
)
TripletFilter
(
IMP
)
CHARMMSegmentTopology
(
IMP::atom
)
FNormal
(
IMP::isd
)
Molecule
(
IMP::atom
)
RegistrationResult
(
IMP::em2d
)
TripletFunctor
(
IMP
)
CHARMMStereochemistryRestraint
(
IMP::atom
)
ForceFieldParameters
(
IMP::atom
)
MonteCarlo
(
IMP::core
)
RemoteError
(
IMP::parallel
)
TripletModifier
(
IMP
)
CHARMMTopology
(
IMP::atom
)
ForceSwitch
(
IMP::atom
)
MonteCarloWithBasinHopping
(
IMP::core
)
RemoveRigidMotionOptimizerState
(
IMP::atom
)
TripletPredicate
(
IMP
)
ChecksScoreState
(
IMP::core
)
FormFactorTable
(
IMP::saxs
)
MonteCarloWithLocalOptimization
(
IMP::core
)
RemoveTranslationOptimizerState
(
IMP::atom
)
TripletRestraint
(
IMP::core
)
ChildrenRefiner
(
IMP::core
)
Fragment
(
IMP::atom
)
Mover
(
IMP::core
)
Replica
TripletsConstraint
(
IMP::container
)
ChimeraWriter
(
IMP::display
)
G
MoverBase
(
IMP::core
)
Representation
(
IMP::restrainer
)
TripletScore
(
IMP
)
ChiSquaredScore
(
IMP::em2d
)
MoveStatisticsScoreState
(
IMP::core
)
RepulsiveDistancePairScore
(
IMP::isd
)
TripletScoreRestraint
(
IMP
)
CloseBipartitePairContainer
(
IMP::container
)
GaussianProcessInterpolation
(
IMP::isd
)
MRCReaderWriter
(
IMP::em
)
Residue
(
RMF
)
TripletsEventOptimizerState
(
IMP::container
)
ClosedCubicSpline
(
IMP::core
)
GaussianProcessInterpolationRestraint
(
IMP::isd
)
MSConnectivityRestraint
(
IMP::core
)
Residue
(
IMP::atom
)
TripletsOptimizerState
(
IMP::container
)
ClosePairContainer
(
IMP::container
)
GaussianRestraint
(
IMP::isd
)
MultiArray
(
IMP::algebra
)
ResidueConst
(
RMF
)
TripletsRestraint
(
IMP::container
)
ClosePairsFinder
(
IMP::core
)
general_parameters
(script10_flexible_fitting)
MultipleBinormalRestraint
(
IMP::modeller
)
ResidueConstFactory
(
RMF
)
TripletsScoreRestraint
(
IMP
)
ClosePairsPairScore
(
IMP::core
)
GeneralizedGuinierPorodFunction
(
IMP::isd
)
MultivariateFNormalSufficient
(
IMP::isd
)
ResidueFactory
(
RMF
)
TruncatedHarmonic
(
IMP::core
)
ClusteredAssignmentContainer
(
IMP::domino
)
GenericAttributeSingletonScore
(
IMP::core
)
MyMetric
(write_a_metric)
ResidueType
Typed
(
IMP::core
)
CMMWriter
(
IMP::display
)
GenericBoundingBox3DSingletonScore
(
IMP::core
)
N
ResolveCollisionsOptimizer
(
IMP::bullet
)
TypedPairScore
(
IMP::core
)
CoarseCC
(
IMP::em
)
GenericDistanceToSingletonScore
(
IMP::core
)
Restraint
(
IMP::restrainer
)
U
CoarseCCatIntervals
(
IMP::em
)
GenericHierarchies
(
IMP::core
)
NearestNeighborD
(
IMP::algebra
)
Restraint
(
IMP
)
CoarseConvolution
(
IMP::em
)
GenericScopedRemoveRestraint
(
IMP
)
NearestNeighborsClosePairsFinder
(
IMP::core
)
Restraint
(
IMP::saxs
)
UnaryFunction
(
IMP
)
Color
(
IMP::display
)
GenericScopedRemoveScoreState
(
IMP
)
NestedRigidBodyStates
(
IMP::domino
)
RestraintGeometry
(
IMP::display
)
UnboundedGridStorageD
(
IMP::algebra::grids
)
Colored
(
RMF
)
GenericScopedRestraint
(
IMP
)
NetworkError
(
IMP::parallel
)
RestraintScoreSubsetFilter
(
IMP::domino
)
UncheckedWeakPointer
(
IMP::base
)
Colored
(
IMP::display
)
GenericScopedScoreState
(
IMP
)
NodeConstHandle
(
RMF
)
RestraintScoreSubsetFilterTable
(
IMP::domino
)
UnivariateFunction
(
IMP::isd
)
ColoredConst
(
RMF
)
Geometry
(
IMP::display
)
NodeHandle
(
RMF
)
RestraintSet
(
IMP
)
UnorderedTypePairPredicate
(
IMP::core
)
ColoredConstFactory
(
RMF
)
GeometryProcessor
(
IMP::display
)
NodeIDD
(
RMF
)
RestraintSetGeometry
(
IMP::display
)
UnorderedTypeQuadPredicate
(
IMP::core
)
ColoredFactory
(
RMF
)
GridClosePairsFinder
(
IMP::core
)
NodeSetConstHandle
(
RMF
)
RestraintStatistics
(
IMP
)
UnorderedTypeSingletonPredicate
(
IMP::core
)
CommonEndpointPairFilter
(
IMP::misc
)
GridD
(
IMP::algebra::grids
)
NodeSetHandle
(
RMF
)
Result
(IMP::isd::AbstractGrid)
UnorderedTypeTripletPredicate
(
IMP::core
)
ComplementarityRestraint
(
IMP::multifit
)
GridIndexD
(
IMP::algebra::grids
)
NOERestraint
(
IMP::isd
)
RigidBody
(
IMP::core
)
USAGE
ComponentHeader
(
IMP::multifit
)
GridStates
(
IMP::em2d
)
NoMoreSlavesError
(
IMP::parallel
)
RigidBodyDiffusion
(
IMP::atom
)
UsageException
(
IMP::base
)
CompoundGeometry
(
IMP::display
)
GSLOptimizer
(
IMP::gsl
)
NonAlternativePDBSelector
(
IMP::atom
)
RigidBodyDistancePairScore
(
IMP::core
)
UsageException
(
RMF
)
CompoundStates
(
IMP::domino
)
H
NonHydrogenMol2Selector
(
IMP::atom
)
RigidBodyHierarchyGeometry
(
IMP::core
)
V
Cone3D
(
IMP::algebra
)
NonWaterNonHydrogenPDBSelector
(
IMP::atom
)
RigidBodyMover
(
IMP::core
)
Configuration
(
IMP
)
Harmonic
(
IMP::core
)
NonWaterPDBSelector
(
IMP::atom
)
RigidBodyStates
(
IMP::domino
)
Validator
(
RMF
)
ConfigurationSet
(
IMP
)
HarmonicDistancePairScore
(
IMP::core
)
NormalizedSphereDistancePairScore
(
IMP::core
)
RigidClosePairsFinder
(
IMP::core
)
ValueException
(
IMP::base
)
ConfigurationSetRMSDMetric
(
IMP::statistics
)
HarmonicLowerBound
(
IMP::core
)
NormalMover
(
IMP::core
)
RigidMember
(
IMP::core
)
vector
(
RMF
)
ConfigurationSetXYZEmbedding
(
IMP::statistics
)
HarmonicSphereDistancePairScore
(
IMP::core
)
NotPDBSelector
(
IMP::atom
)
RigidParticle
(
RMF
)
Vector2D
ConjugateGradients
(
IMP::gsl
)
HarmonicUpperBound
(
IMP::core
)
NPDBSelector
(
IMP::atom
)
RigidParticleConst
(
RMF
)
VectorD
(
IMP::algebra
)
ConjugateGradients
(
IMP::core
)
HarmonicUpperBoundSphereDiameterPairScore
(
IMP::core
)
Nuisance
(
IMP::isd
)
RigidParticleConstFactory
(
RMF
)
VectorDEmbedding
(
IMP::statistics
)
ConnectingPairContainer
(
IMP::container
)
HarmonicUpperBoundSphereDistancePairScore
(
IMP::core
)
O
RigidParticleFactory
(
RMF
)
VectorKDMetric
(
IMP::algebra
)
ConnectivityRestraint
(
IMP::core
)
HarmonicWell
(
IMP::core
)
RMSDCalculator
(
IMP::atom
)
VectorOfRefCounted
(
IMP
)
ConsecutivePairContainer
(
IMP::container
)
HasHigherCCC
(
IMP::em2d
)
Object
(
IMP::base
)
RMSDClustering
(
IMP::multifit
)
VelocityScalingOptimizerState
(
IMP::atom
)
ConstantPairPredicate
(
IMP::core
)
HasLowerScore
(
IMP::em2d
)
OpenCubicSpline
(
IMP::core
)
Rotation2D
(
IMP::algebra
)
VersionInfo
(
IMP::base
)
ConstantQuadPredicate
(
IMP::core
)
HDF5ConstAttributes
(
RMF
)
Optimizer
(
IMP
)
Rotation3D
(
IMP::algebra
)
VolumeRestraint
(
IMP::core
)
ConstantRestraint
(
IMP::core
)
HDF5ConstDataSetD
(
RMF
)
OptimizeRestraints
(
IMP::domino
)
S
vonMises
(
IMP::isd
)
ConstantSingletonPredicate
(
IMP::core
)
HDF5ConstFile
(
RMF
)
OptimizerState
(
IMP
)
vonMisesKappaConjugateRestraint
(
IMP::isd
)
ConstantTripletPredicate
(
IMP::core
)
HDF5ConstGroup
(
RMF
)
OrderedDict
(IMP::isd::OrderedDict)
SameResiduePairFilter
(
IMP::atom
)
vonMisesKappaJeffreysRestraint
(
IMP::isd
)
Constraint
(
IMP
)
HDF5DataSetD
(
RMF
)
OrderedTypePairPredicate
(
IMP::core
)
SampleAssignmentContainer
(
IMP::domino
)
vonMisesSufficient
(
IMP::isd
)
Container
(
IMP
)
HDF5DataSetIndexD
(
RMF
)
OrderedTypeQuadPredicate
(
IMP::core
)
SampledDensityMap
(
IMP::em
)
Voxel
(
IMP::em
)
Context
(
IMP::parallel
)
HDF5File
(
RMF
)
OrderedTypeSingletonPredicate
(
IMP::core
)
Sampler
(
IMP
)
W
Copy
(
IMP::atom
)
HDF5Group
(
RMF
)
OrderedTypeTripletPredicate
(
IMP::core
)
SaveHierarchyConfigurationOptimizerState
(
IMP::rmf
)
Cosine
(
IMP::core
)
HDF5Handle
(
RMF
)
OrPDBSelector
(
IMP::atom
)
Scale
(
IMP::isd
)
WARNING
CoulombPairScore
(
IMP::atom
)
HDF5MutableAttributes
(
RMF
)
OwnerPointer
(
IMP::base
)
ScopedAddCacheAttribute
(
IMP
)
WaterPDBSelector
(
IMP::atom
)
Covariance1DFunction
(
IMP::isd
)
HDF5Object
(
RMF
)
P
ScopedFailureHandler
(
IMP
)
WeakPointer
(
IMP::base
)
Cover
(
IMP::core
)
HDF5SharedHandle
(
RMF
)
ScopedSetAttribute
(
IMP
)
WeightedExcludedVolumeRestraint
(
IMP::multifit
)
CoverBond
(
IMP::atom
)
HeapAssignmentContainer
(
IMP::domino
)
PackedAssignmentContainer
(
IMP::domino
)
ScopedSetFloatAttribute
WeightedSphereDistancePairScore
(
IMP::core
)
CoverRefined
(
IMP::core
)
HierarchiesGeometry
(
IMP::atom
)
PairConstraint
(
IMP::core
)
Score
(
IMP::saxs
)
WormLikeChain
(
IMP::misc
)
CPDBSelector
(
IMP::atom
)
Hierarchy
(
IMP::core
)
PairContainer
(
IMP
)
Score
(
RMF
)
WriteAssignmentContainer
(
IMP::domino
)
CreateLogContext
(
IMP::base
)
Hierarchy
(
IMP::atom
)
PairContainerSet
(
IMP::container
)
ScoreConst
(
RMF
)
WriteHDF5AssignmentContainer
(
IMP::domino
)
CustomXYZR
(
IMP::misc
)
HierarchyCounter
(
IMP::core
)
PairContainerStatistics
(
IMP::container
)
ScoreConstFactory
(
RMF
)
WriteOptimizerState
(
IMP::display
)
Cylinder
(
RMF
)
HierarchyGeometry
(
IMP::atom
)
PairDerivativeFunctor
(
IMP
)
ScoreFactory
(
RMF
)
WritePDBFailureHandler
(
IMP::atom
)
Cylinder3D
(
IMP::algebra
)
HierarchyTraits
(
IMP::core
)
PairDerivativeModifier
(
IMP
)
ScoreFunction
(
IMP::em2d
)
WritePDBOptimizerState
(
IMP::atom
)
CylinderConst
(
RMF
)
HierarchyVisitor
(
IMP::core
)
PairFilter
(
IMP
)
ScoreState
(
IMP
)
Writer
(
IMP::display
)
CylinderConstFactory
(
RMF
)
HighDensityEmbedding
(
IMP::em
)
PairFunctor
(
IMP
)
Segment3D
(
IMP::algebra
)
WriteRestraintScoresOptimizerState
(
IMP::core
)
CylinderFactory
(
RMF
)
HistogramD
(
IMP::statistics
)
PairGeometry
(
IMP::display
)
SegmentationParameters
(
IMP::em2d
)
WriterOutput
(
IMP::display
)
CylinderGeometry
(
IMP::display
)
History
(IMP::isd::History)
PairListSubsetFilterTable
(
IMP::domino
)
SegmentGeometry
(
IMP::display
)
X
D
HybridMonteCarlo
(
IMP::isd
)
PairModifier
(
IMP
)
Selection
(
IMP::atom
)
HydrogenPDBSelector
(
IMP::atom
)
PairPredicate
(
IMP
)
SelectionGeometry
(
IMP::atom
)
XMLDisplay
(
IMP::restrainer
)
DataObject
(
IMP::core
)
I
PairRestraint
(
IMP::core
)
SerialMover
(
IMP::core
)
XMLRepresentation
(
IMP::restrainer
)
DataPoints
(
IMP::multifit
)
PairsConstraint
(
IMP::container
)
Server
(IMP::isd::AbstractGrid)
XMLRestraint
(
IMP::restrainer
)
DataPointsAssignment
(
IMP::multifit
)
Image
(
IMP::em2d
)
PairScore
(
IMP
)
set
(
IMP::compatibility
)
XYZ
(
IMP::core
)
Decorator
(
IMP
)
ImageHeader
(
IMP::em
)
PairScoreRestraint
(
IMP
)
SetCheckState
(
IMP::base
)
XYZDerivativeGeometry
(
IMP::core
)
DefaultEmbeddingD
(
IMP::algebra::grids
)
IMPRestraints
(
IMP::modeller
)
PairsEventOptimizerState
(
IMP::container
)
SetLogState
XYZR
(
IMP::core
)
DeltaDistributionFunction
(
IMP::saxs
)
ImproperSingletonScore
(
IMP::atom
)
PairsGeometry
(
IMP::display
)
SetLogState
(
IMP::base
)
XYZRGeometry
DenseGrid3D
(
IMP::algebra
)
InBoundingBox3DSingletonPredicate
(
IMP::core
)
PairsOptimizerState
(
IMP::container
)
SetLogTarget
(
IMP::base
)
XYZRGeometry
(
IMP::core
)
DenseGridStorageD
(
IMP::algebra::grids
)
InContainerPairFilter
(
IMP::container
)
PairsRestraint
(
IMP::container
)
SettingsData
(
IMP::multifit
)
XYZRsGeometry
DensityDataPoints
(
IMP::multifit
)
InContainerQuadFilter
(
IMP::container
)
PairsScoreRestraint
(
IMP
)
sfo_common
(IMP::isd::shared_functions)
XYZRsGeometry
(
IMP::core
)
DensityFillingRestraint
(
IMP::em
)
InContainerSingletonFilter
(
IMP::container
)
ParabolicFit2D
(
IMP::algebra
)
SGEPESlaveArray
(
IMP::parallel
)
XYZStates
(
IMP::domino
)
DensityHeader
(
IMP::em
)
InContainerTripletFilter
(
IMP::container
)
Particle
(
RMF
)
SGEQsubSlaveArray
(
IMP::parallel
)
_
DensityMap
(
IMP::em
)
IndexException
(
IMP::base
)
Particle
(
IMP
)
SimpleAssignmentsTable
(
IMP::domino
)
DependencyScoreState
(
IMP::domino
)
IndexStates
(
IMP::domino
)
ParticleConst
(
RMF
)
SimpleConnectivity
(
IMP::restrainer
)
_ConstOptimizer
DerivativeAccumulator
(
IMP
)
InteractionGraph
ParticleConstFactory
(
RMF
)
SimpleDiameter
(
IMP::restrainer
)
_ConstRestraint
DerivativesFromRefined
(
IMP::core
)
InternalException
(
IMP::base
)
ParticleEmbedding
(
IMP::statistics
)
SimpleDistance
(
IMP::restrainer
)
DerivativesToRefined
(
IMP::core
)
InternalException
(
RMF
)
ParticleFactory
(
RMF
)
SimpleEMFit
(
IMP::restrainer
)
DiameterRestraint
(
IMP::core
)
IOException
(
IMP::base
)
ParticlePair
SimpleExcludedVolume
(
IMP::restrainer
)
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
K
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L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
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T
|
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_
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