 |
This module provides support for displaying and exporting IMP data in various ways.
This module provides code to write various file formats for displaying data from IMP optimizations. The display::Writer classes provides the base class for objects which write to specific file formats and the display::Geometry provide means of describing geometry. Currently it supports output to
And display of boxes, points, spheres, segments, ellipsoids are supported.
Examples:
Author(s): Daniel Russel
Version: SVN.r12662 with cgal
License: LGPL. This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
Publications:
IMP and how to apply them to biological problems.Classes | |
| class | BildWriter |
| Write a Bild file with the geometry. More... | |
| class | BoundingBoxGeometry |
| Display a bounding box. More... | |
| class | ChimeraWriter |
| Write geometry to a python file for Chimera to read. More... | |
| class | CMMWriter |
| Write a CMM file with the geometry. More... | |
| class | Color |
| Represent an RGB color. More... | |
| class | Colored |
| A particle with a color. More... | |
| class | CompoundGeometry |
| Group of set of geometric elements. More... | |
| class | CylinderGeometry |
| Display a cylinder. More... | |
| class | EllipsoidGeometry |
| Display a ellipsoid. More... | |
| class | FilterGeometry |
| Remove geometry which is not above a plane. More... | |
| class | Geometry |
| The base class for geometry. More... | |
| class | GeometryProcessor |
| Provide a standard geometry processing framework. More... | |
| class | LabelGeometry |
| A text label for a ball in space. More... | |
| class | PairGeometry |
| A base class for geometry contained in particles. More... | |
| class | PairsGeometry |
| A base class for geometry from a set of particles. More... | |
| class | PointGeometry |
| Display a point. More... | |
| class | PolygonGeometry |
| class | PymolWriter |
| Write a CGO file with the geometry. More... | |
| class | ReferenceFrameGeometry |
| Display a reference frame. More... | |
| class | RestraintGeometry |
| Try to draw some stuff for a generic restraint. More... | |
| class | RestraintSetGeometry |
| Geometry for a whole set of restraints. More... | |
| class | SegmentGeometry |
| Display a segment. More... | |
| class | SingletonGeometry |
| A base class for geometry contained in particles. More... | |
| class | SingletonsGeometry |
| A base class for geometry from a set of particles. More... | |
| class | SphereGeometry |
| Display a sphere. More... | |
| class | SurfaceMeshGeometry |
| Display a surface mesh. More... | |
| class | TextWriter |
| class | TriangleGeometry |
| Display a triangule. More... | |
| class | WriteOptimizerState |
| class | Writer |
| Base class for writing geometry to a file. More... | |
| class | WriterOutput |
Colormaps | |
These functions map a number in the interval [0,1] to a color using some color map. | |
| Color | get_jet_color (double f) |
| Return the color for f from the jet color map. | |
| Color | get_hot_color (double f) |
| Return the color for f from the hot color map. | |
| Color | get_rgb_color (double f) |
| Return the color for f from the rgb color map. | |
| Color | get_grey_color (double f) |
| Return the a greyscale value for f. | |
| Color | get_gnuplot_color (double f) |
| Return colors using the gnuplot default color map. | |
Functions | |
| Writer * | create_writer (std::string filename) |
| Color | get_display_color (unsigned int i) |
| Color | get_interpolated_rgb (const Color &a, const Color &b, double f) |
| Return a color interpolated between a and b in RGB space. | |
| Writer* IMP::display::create_writer | ( | std::string | filename | ) |
Create an appropriate writer based on the file suffix.
| IMP::display::get_display_color | ( | unsigned int | i | ) |
Produce a color that is attempted to be contrasting with the i-1 previous colors. Currently, they recycle after 11, but they can be darkened instead. Just ask.
Examples: initialize chains, displaying ensembles, multiscale, rigid body excluded volume, setup, nup84 cg, nup84 rb, optimize balls
| Color get_gnuplot_color | ( | double | f | ) |
Return colors using the gnuplot default color map.
| Color get_grey_color | ( | double | f | ) |
Return the a greyscale value for f.
| Color get_hot_color | ( | double | f | ) |
Return the color for f from the hot color map.
| Color get_interpolated_rgb | ( | const Color & | a, |
| const Color & | b, | ||
| double | f | ||
| ) |
Return a color interpolated between a and b in RGB space.
If f is 0, then a is returned, if f is 1, b is returned.
| IMP::display::get_jet_color | ( | double | f | ) |
Return the color for f from the jet color map.
Examples: displaying ensembles
| Color get_rgb_color | ( | double | f | ) |
Return the color for f from the rgb color map.