Sub-directories here contain various sample and test scripts, some of
which are:

automodel         ... sample modeling and loop refinement, given an alignment
all-steps         ... sample template searching, alignment, and modeling
commands          ... sample .py files for each MODELLER command
salign            ... examples for SALIGN alignment
debug-energy_INT  ... energy testing, internal development stuff
atom_files        ... atom files for some scripts
dev_INT           ... miscellaneous, internal development stuff

---

To execute all .py files                     :  run_tests

To check all the resulting log files         :  Scan_all_err

To clean everything                          :  clean_tests

Notes:

You need to have ASGL installed for all-steps/cluster.top not to fail
                     (FILE:  all-steps/alignment.seg.log message)
