imp
doc
wiki
download
groups
imp at salilab.org | contact
Main Page
Modules
Class Index
Methods and Variables
Class Hierarchy
Macros
Related Pages
Class Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
K
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
|
X
|
_
A
Decorator
(
IMP
)
InContainerQuadFilter
(
IMP::container
)
ParticleEmbedding
(
IMP::statistics
)
SingletonsOptimizerState
(
IMP::container
)
AllBipartitePairContainer
(
IMP::container
)
DeltaDistributionFunction
(
IMP::saxs
)
InContainerSingletonFilter
(
IMP::container
)
ParticlePair
SingletonsRestraint
(
IMP::container
)
AllMol2Selector
(
IMP::atom
)
DenseGrid3D
(
IMP::algebra
)
InContainerTripletFilter
(
IMP::container
)
ParticleStates
(
IMP::domino
)
SingletonsScoreRestraint
(
IMP
)
AllPairContainer
(
IMP::container
)
DenseGridStorageD
(
IMP::algebra::grids
)
IncrementalBallMover
(
IMP::core
)
ParticleStatesTable
(
IMP::domino
)
SmoothingFunction
(
IMP::atom
)
AllPDBSelector
(
IMP::atom
)
DensityDataPoints
(
IMP::multifit
)
IndexException
(
IMP
)
ParticleTuple
(
IMP
)
SoftCylinderPairScore
(
IMP::misc
)
AndPDBSelector
(
IMP::atom
)
DensityHeader
(
IMP::em
)
IndexStates
(
IMP::domino
)
PartitionalClustering
(
IMP::statistics
)
SoftSpherePairScore
(
IMP::core
)
Angle
(
IMP::atom
)
DensityMap
(
IMP::em
)
IndexTraits
(
IMP::hdf5
)
PartitionalClusteringWithCenter
(
IMP::statistics
)
SolventAccessibleSurface
(
IMP::saxs
)
AngleRestraint
(
IMP::core
)
DerivativeAccumulator
(
IMP
)
InternalException
(
IMP
)
PDBSelector
(
IMP::atom
)
SparseGrid3D
(
IMP::algebra
)
AngleSingletonScore
(
IMP::atom
)
DerivativesFromRefined
(
IMP::core
)
IntTraits
(
IMP::hdf5
)
Plane3D
(
IMP::algebra
)
SparseGridStorageD
(
IMP::algebra::grids
)
AngleTripletScore
(
IMP::core
)
DerivativesToRefined
(
IMP::core
)
IOException
(
IMP
)
Pointer
(
IMP
)
SparseUnboundedGrid3D
(
IMP::algebra
)
AssemblyHeader
(
IMP::multifit
)
DiameterRestraint
(
IMP::core
)
K
PointGeometry
(
IMP::display
)
SparseUnboundedGridD
(
IMP::algebra
)
Atom
(
IMP::atom
)
Diffusion
(
IMP::atom
)
KClosePairsPairScore
(
IMP::core
)
PolygonGeometry
(
IMP::display
)
SparseUnboundedIntGrid3D
ATOMPDBSelector
(
IMP::atom
)
Dihedral
(
IMP::atom
)
KernelParameters
(
IMP::em
)
PPDBSelector
(
IMP::atom
)
SphereD
(
IMP::algebra
)
AtomType
DihedralRestraint
(
IMP::core
)
Key
(
IMP
)
PrincipalComponentAnalysis
(
IMP::algebra
)
SphereDistancePairScore
(
IMP::core
)
AttributeSingletonScore
(
IMP::core
)
DihedralSingletonScore
(
IMP::atom
)
Key
(
IMP::hdf5
)
Profile
(
IMP::saxs
)
SphereDistanceToSingletonScore
(
IMP::core
)
B
DiscreteSampler
(
IMP::domino
)
KeyCategory
(
IMP::hdf5
)
ProteinLigandAtomPairScore
(
IMP::atom
)
SphereGeometry
(
IMP::display
)
BallMover
(
IMP::core
)
DisjointSetsSubsetFilterTable
(
IMP::domino
)
L
ProteinLigandRestraint
(
IMP::atom
)
SpherePatch3D
(
IMP::algebra
)
BerendsenThermostatOptimizerState
(
IMP::atom
)
Display
(
IMP::restrainer
)
LabelGeometry
(
IMP::display
)
PymolWriter
(
IMP::display
)
SphericalVector3D
(
IMP::algebra
)
BildWriter
(
IMP::display
)
DistanceMask
(
IMP::em
)
LangevinThermostatOptimizerState
(
IMP::atom
)
Q
SpiderHeader
(
IMP::em
)
Bond
(
IMP::atom
)
DistancePairScore
(
IMP::core
)
LeavesRefiner
(
IMP::core
)
QuadConstraint
(
IMP::core
)
SpiderMapReaderWriter
(
IMP::em
)
Bonded
(
IMP::atom
)
DistanceRestraint
(
IMP::core
)
LennardJones
(
IMP::atom
)
QuadContainer
(
IMP
)
StateAdaptor
(
IMP::misc
)
BondedPairFilter
(
IMP::atom
)
DistanceToSingletonScore
(
IMP::core
)
LennardJonesPairScore
(
IMP::atom
)
QuadContainerSet
(
IMP::container
)
StatisticalPairScore
(
IMP::core
)
BondEndpointsRefiner
(
IMP::atom
)
Distribution
(
IMP::saxs
)
Linear
(
IMP::core
)
QuadContainerStatistics
(
IMP::container
)
SteepestDescent
(
IMP::core
)
BondGeometry
(
IMP::display
)
Domain
(
IMP::atom
)
LinearFit
(
IMP::algebra
)
QuadFilter
(
IMP
)
StereochemistryPairFilter
(
IMP::atom
)
BondGraph
(
IMP::atom
)
DominoSampler
(
IMP::domino
)
ListPairContainer
(
IMP::container
)
QuadFunctor
(
IMP
)
StringTraits
(
IMP::hdf5
)
BondPairContainer
(
IMP::atom
)
DopePairScore
(
IMP::atom
)
ListQuadContainer
(
IMP::container
)
QuadModifier
(
IMP
)
Subset
(
IMP::domino
)
BondsGeometry
(
IMP::display
)
E
ListSingletonContainer
(
IMP::container
)
QuadraticClosePairsFinder
(
IMP::core
)
SubsetFilter
(
IMP::domino
)
BondSingletonScore
(
IMP::atom
)
EdgePairsGeometry
(
IMP::display
)
ListSubsetFilterTable
(
IMP::domino
)
QuadRestraint
(
IMP::core
)
SubsetFilterTable
(
IMP::domino
)
BoundedGridStorageD
(
IMP::algebra::grids
)
ElementTable
(
IMP::atom
)
ListSubsetStatesTable
(
IMP::domino
)
QuadsConstraint
(
IMP::container
)
SubsetState
(
IMP::domino
)
BoundingBox3DSingletonScore
(
IMP::core
)
Ellipsoid3D
(
IMP::algebra
)
ListTripletContainer
(
IMP::container
)
QuadScore
(
IMP
)
SubsetStatesTable
(
IMP::domino
)
BoundingBoxD
(
IMP::algebra
)
EllipsoidGeometry
(
IMP::display
)
LogPairScore
(
IMP::misc
)
QuadScoreRestraint
(
IMP
)
SurfaceMeshGeometry
(
IMP::display
)
BoundingBoxGeometry
(
IMP::display
)
Embedding
(
IMP::statistics
)
LowestRefinedPairScore
(
IMP::misc
)
QuadsOptimizerState
(
IMP::container
)
SurfaceShellDensityMap
(
IMP::em
)
BoxSweepClosePairsFinder
(
IMP::core
)
EqualitySubsetFilterTable
(
IMP::domino
)
M
QuadsRestraint
(
IMP::container
)
T
BranchAndBoundSampler
(
IMP::domino
)
EquivalenceSubsetFilterTable
(
IMP::domino
)
Main
(
IMP::restrainer
)
QuadsScoreRestraint
(
IMP
)
TableRefiner
(
IMP::core
)
BranchAndBoundSubsetStatesTable
(
IMP::domino
)
ExampleComplexRestraint
(
IMP::example
)
MapReaderWriter
(
IMP::em
)
QuasiNewton
(
IMP::gsl
)
TextInput
(
IMP
)
BrownianDynamics
(
IMP::atom
)
ExampleDecorator
(
IMP::example
)
Mass
(
IMP::atom
)
R
TextOutput
(
IMP
)
C
ExamplePairScore
(IMP::examplesystemlocal)
Matrix2D
(
IMP::algebra
)
RadialDistributionFunction
(
IMP::saxs
)
Transform
(
IMP::core
)
CAlphaPDBSelector
(
IMP::atom
)
ExamplePairScore
(
IMP::example
)
Matrix3D
(
IMP::algebra
)
RadiusDependentKernelParameters
(
IMP::em
)
Transformation2D
(
IMP::algebra
)
CBetaPDBSelector
(
IMP::atom
)
ExampleRefCounted
(
IMP::example
)
MCCGSampler
(
IMP::core
)
RadiusOfGyrationRestraint
(
IMP::multifit
)
Transformation3D
(
IMP::algebra
)
Centroid
(
IMP::core
)
ExampleRestraint
(IMP::examplesystemlocal)
md_parameters
(modeller_refinement)
RecursiveStates
(
IMP::domino
)
TransformationAndReflectionSymmetry
(
IMP::core
)
CentroidOfRefined
(
IMP::core
)
ExampleRestraint
(
IMP::example
)
MDMover
(
IMP::atom
)
RefCounted
(
IMP
)
TransformationSymmetry
(
IMP::core
)
Chain
(
IMP::atom
)
ExampleSingletonModifier
(IMP::examplesystemlocal)
Metric
(
IMP::statistics
)
Reference
(
IMP::core
)
TransformedDistancePairScore
(
IMP::core
)
ChainPDBSelector
(
IMP::atom
)
ExampleSingletonModifier
(
IMP::example
)
MinimumPairRestraint
(
IMP::container
)
ReferenceFrame3D
(
IMP::algebra
)
Triangle3D
(
IMP::algebra
)
Charged
(
IMP::atom
)
ExampleSubsetFilterTable
(
IMP::example
)
MinimumPairScore
(
IMP::container
)
ReferenceFrameGeometry
(
IMP::display
)
TriangleGeometry
(
IMP::display
)
CHARMMAtom
(
IMP::atom
)
ExampleTemplateClassD
(
IMP::example
)
MinimumQuadRestraint
(
IMP::container
)
RefinedPairsPairScore
(
IMP::core
)
TripletConstraint
(
IMP::core
)
CHARMMAtomTopology
(
IMP::atom
)
ExampleUnaryFunction
(
IMP::example
)
MinimumQuadScore
(
IMP::container
)
Refiner
(
IMP
)
TripletContainer
(
IMP
)
CHARMMBondEndpoint
(
IMP::atom
)
Exception
(
IMP
)
MinimumRestraint
(
IMP::core
)
Reflection3D
(
IMP::algebra
)
TripletContainerSet
(
IMP::container
)
CHARMMBondParameters
(
IMP::atom
)
ExcludedVolumeRestraint
(
IMP::core
)
MinimumSingletonRestraint
(
IMP::container
)
RemoveRigidMotionOptimizerState
(
IMP::atom
)
TripletContainerStatistics
(
IMP::container
)
CHARMMConnection
(
IMP::atom
)
ExclusionSubsetFilterTable
(
IMP::domino
)
MinimumSingletonScore
(
IMP::container
)
RemoveTranslationOptimizerState
(
IMP::atom
)
TripletFilter
(
IMP
)
CHARMMDihedralParameters
(
IMP::atom
)
ExtendedGridIndexD
(
IMP::algebra::grids
)
MinimumTripletRestraint
(
IMP::container
)
Representation
(
IMP::restrainer
)
TripletFunctor
(
IMP
)
CHARMMIdealResidueTopology
(
IMP::atom
)
F
MinimumTripletScore
(
IMP::container
)
Residue
(
IMP::atom
)
TripletModifier
(
IMP
)
CHARMMInternalCoordinate
(
IMP::atom
)
FailureHandler
(
IMP
)
Model
(
IMP
)
ResidueType
TripletRestraint
(
IMP::core
)
CHARMMParameters
(
IMP::atom
)
FailureHandlerBase
(
IMP
)
ModelException
(
IMP
)
ResolveCollisionsOptimizer
(
IMP::bullet
)
TripletsConstraint
(
IMP::container
)
CHARMMPatch
(
IMP::atom
)
FilterGeometry
(
IMP::display
)
ModifierVisitor
(
IMP::core
)
Restraint
(
IMP
)
TripletScore
(
IMP
)
CHARMMResidueTopology
(
IMP::atom
)
FitRestraint
(
IMP::em
)
Mol2Selector
(
IMP::atom
)
Restraint
(
IMP::restrainer
)
TripletScoreRestraint
(
IMP
)
CHARMMResidueTopologyBase
(
IMP::atom
)
FittingSolutionRecord
(
IMP::multifit
)
MolecularDynamics
(
IMP::atom
)
Restraint
(
IMP::saxs
)
TripletsOptimizerState
(
IMP::container
)
CHARMMSegmentTopology
(
IMP::atom
)
FittingSolutions
(
IMP::em
)
Molecule
(
IMP::atom
)
RestraintGeometry
(
IMP::display
)
TripletsRestraint
(
IMP::container
)
CHARMMStereochemistryRestraint
(
IMP::atom
)
FixedRefiner
(
IMP::core
)
MonteCarlo
(
IMP::core
)
RestraintScoreSubsetFilter
(
IMP::domino
)
TripletsScoreRestraint
(
IMP
)
CHARMMTopology
(
IMP::atom
)
FixedXYZ
(
IMP::algebra
)
Mover
(
IMP::core
)
RestraintScoreSubsetFilterTable
(
IMP::domino
)
TruncatedHarmonic
(
IMP::core
)
ChecksScoreState
(
IMP::core
)
FixedZYZ
(
IMP::algebra
)
MoverBase
(
IMP::core
)
RestraintSet
(
IMP
)
TupleConstraint
(
IMP::core
)
ChildrenRefiner
(
IMP::core
)
FloatTraits
(
IMP::hdf5
)
MoveStatisticsScoreState
(
IMP::core
)
RigidBody
(
IMP::core
)
TupleRestraint
(
IMP::core
)
ChimeraWriter
(
IMP::display
)
ForceFieldParameters
(
IMP::atom
)
MRCReaderWriter
(
IMP::em
)
RigidBodyDistancePairScore
(
IMP::core
)
Typed
(
IMP::core
)
CloseBipartitePairContainer
(
IMP::container
)
ForceSwitch
(
IMP::atom
)
MultiArray
(
IMP::algebra
)
RigidBodyMover
(
IMP::core
)
TypedPairScore
(
IMP::core
)
ClosedCubicSpline
(
IMP::core
)
FormFactorTable
(
IMP::saxs
)
N
RigidBodyStates
(
IMP::domino
)
U
ClosePairContainer
(
IMP::container
)
Fragment
(
IMP::atom
)
NearestNeighborD
(
IMP::algebra
)
RigidClosePairsFinder
(
IMP::core
)
UnaryFunction
(
IMP
)
ClosePairsFinder
(
IMP::core
)
FSM
(doxypy)
NearestNeighborsClosePairsFinder
(
IMP::core
)
RigidMember
(
IMP::core
)
UnboundedGridStorageD
(
IMP::algebra::grids
)
ClosePairsPairScore
(
IMP::core
)
G
NodeHandle
(
IMP::hdf5
)
RMSDCalculator
(
IMP::atom
)
UsageException
(
IMP
)
CMMWriter
(
IMP::display
)
general_parameters
(script10_flexible_fitting)
NodeID
(
IMP::hdf5
)
RMSDClustering
(
IMP::multifit
)
V
CoarseCC
(
IMP::em
)
GenericHierarchies
(
IMP::core
)
NodeIDTraits
(
IMP::hdf5
)
RootHandle
(
IMP::hdf5
)
ValueException
(
IMP
)
CoarseCCatIntervals
(
IMP::em
)
GenericHierarchiesTemp
(
IMP::core
)
NonAlternativePDBSelector
(
IMP::atom
)
Rotation2D
(
IMP::algebra
)
VectorD
(
IMP::algebra
)
CoarseConvolution
(
IMP::em
)
GenericInContainerPairFilter
(
IMP::container
)
NonHydrogenMol2Selector
(
IMP::atom
)
Rotation3D
(
IMP::algebra
)
VectorDEmbedding
(
IMP::statistics
)
Color
(
IMP::display
)
GenericScopedRemoveRestraint
(
IMP
)
NonWaterNonHydrogenPDBSelector
(
IMP::atom
)
S
VectorOfRefCounted
(
IMP
)
Colored
(
IMP::display
)
GenericScopedRestraint
(
IMP
)
NonWaterPDBSelector
(
IMP::atom
)
SameResiduePairFilter
(
IMP::atom
)
VelocityScalingOptimizerState
(
IMP::atom
)
CommonEndpointPairFilter
(
IMP::misc
)
GenericScopedScoreState
(
IMP
)
NormalizedSphereDistancePairScore
(
IMP::core
)
SampledDensityMap
(
IMP::em
)
VersionInfo
(
IMP
)
ComponentHeader
(
IMP::multifit
)
Geometry
(
IMP::display
)
NormalMover
(
IMP::core
)
Sampler
(
IMP
)
VolumeRestraint
(
IMP::core
)
CompoundGeometry
(
IMP::display
)
GeometryProcessor
(
IMP::display
)
NotPDBSelector
(
IMP::atom
)
SaveOptimizeds
(
IMP
)
Voxel
(
IMP::em
)
CompoundStates
(
IMP::domino
)
GridClosePairsFinder
(
IMP::core
)
NPDBSelector
(
IMP::atom
)
ScopedFailureHandler
(
IMP
)
W
Cone3D
(
IMP::algebra
)
GridD
(
IMP::algebra::grids
)
O
Score
(
IMP::saxs
)
WARNING
Configuration
(
IMP
)
GridIndexD
(
IMP::algebra::grids
)
Object
(
IMP
)
ScoreState
(
IMP
)
WaterPDBSelector
(
IMP::atom
)
ConfigurationSet
(
IMP
)
GSLOptimizer
(
IMP::gsl
)
OpenCubicSpline
(
IMP::core
)
Segment3D
(
IMP::algebra
)
WeakPointer
(
IMP
)
ConfigurationSetRMSDMetric
(
IMP::statistics
)
H
Optimizer
(
IMP
)
SegmentGeometry
(
IMP::display
)
WeightedExcludedVolumeRestraint
(
IMP::em
)
ConfigurationSetXYZEmbedding
(
IMP::statistics
)
Harmonic
(
IMP::core
)
OptimizeRestraints
(
IMP::domino
)
Selection
(
IMP::atom
)
WeightedSphereDistancePairScore
(
IMP::core
)
ConjugateGradients
(
IMP::gsl
)
HarmonicDistancePairScore
(
IMP::core
)
OptimizerState
(
IMP
)
SetLogState
(
IMP
)
WormLikeChain
(
IMP::misc
)
ConjugateGradients
(
IMP::core
)
HarmonicLowerBound
(
IMP::core
)
OrPDBSelector
(
IMP::atom
)
SetLogTarget
(
IMP
)
WriteOptimizerState
(
IMP::display
)
ConnectingPairContainer
(
IMP::container
)
HarmonicSphereDistancePairScore
(
IMP::core
)
P
SettingsData
(
IMP::multifit
)
WriteParticlesBinaryFailureHandler
(
IMP
)
ConnectivityRestraint
(
IMP::core
)
HarmonicUpperBound
(
IMP::core
)
PairConstraint
(
IMP::core
)
SimpleConnectivity
(
IMP::restrainer
)
WriteParticlesBinaryOptimizerState
(
IMP
)
ConnectivityRestraintGeometry
(
IMP::display
)
HarmonicUpperBoundSphereDistancePairScore
(
IMP::core
)
PairContainer
(
IMP
)
SimpleDiameter
(
IMP::restrainer
)
WriteParticlesFailureHandler
(
IMP
)
ConsecutivePairContainer
(
IMP::container
)
HarmonicWell
(
IMP::core
)
PairContainerSet
(
IMP::container
)
SimpleDistance
(
IMP::restrainer
)
WriteParticlesOptimizerState
(
IMP
)
ConstantRestraint
(
IMP::core
)
HDF5DataSet
(
IMP::hdf5
)
PairContainerStatistics
(
IMP::container
)
SimpleEMFit
(
IMP::restrainer
)
WritePDBFailureHandler
(
IMP::atom
)
Constraint
(
IMP
)
HDF5Group
(
IMP::hdf5
)
PairFilter
(
IMP
)
SimpleExcludedVolume
(
IMP::restrainer
)
WritePDBOptimizerState
(
IMP::atom
)
Container
(
IMP
)
HDF5Handle
(
IMP::hdf5
)
PairFunctor
(
IMP
)
Simplex
(
IMP::gsl
)
Writer
(
IMP::display
)
ContainerConstraint
(
IMP::container
)
HDF5SharedHandle
(
IMP::hdf5
)
PairGeometry
(
IMP::display
)
Simulator
(
IMP::atom
)
X
ContainerRestraint
(
IMP::container
)
HierarchiesGeometry
(
IMP::display
)
PairModifier
(
IMP
)
SingletonConstraint
(
IMP::core
)
XMLDisplay
(
IMP::restrainer
)
Cosine
(
IMP::core
)
Hierarchy
(
IMP::core
)
PairRestraint
(
IMP::core
)
SingletonContainer
(
IMP
)
XMLRepresentation
(
IMP::restrainer
)
CoulombPairScore
(
IMP::atom
)
Hierarchy
(
IMP::atom
)
PairRestraintGeometry
(
IMP::display
)
SingletonContainerSet
(
IMP::container
)
XMLRestraint
(
IMP::restrainer
)
Cover
(
IMP::core
)
HierarchyCounter
(
IMP::core
)
PairsConstraint
(
IMP::container
)
SingletonContainerStatistics
(
IMP::container
)
XYZ
(
IMP::core
)
CoverBond
(
IMP::atom
)
HierarchyGeometry
(
IMP::display
)
PairScore
(
IMP
)
SingletonFilter
(
IMP
)
XYZDerivativeGeometry
(
IMP::display
)
CoverRefined
(
IMP::core
)
HierarchyTraits
(
IMP::core
)
PairScoreRestraint
(
IMP
)
SingletonFunctor
(
IMP
)
XYZR
(
IMP::core
)
CPDBSelector
(
IMP::atom
)
HierarchyVisitor
(
IMP::core
)
PairsGeometry
(
IMP::display
)
SingletonGeometry
(
IMP::display
)
XYZRGeometry
(
IMP::display
)
CreateLogContext
(
IMP
)
HighDensityEmbedding
(
IMP::em
)
PairsOptimizerState
(
IMP::container
)
SingletonModifier
(
IMP
)
XYZRsGeometry
(
IMP::display
)
CustomXYZR
(
IMP::misc
)
Histogram
(
IMP::statistics
)
PairsRestraint
(
IMP::container
)
SingletonRestraint
(
IMP::core
)
XYZRsGeometry
Cylinder3D
(
IMP::algebra
)
HydrogenPDBSelector
(
IMP::atom
)
PairsRestraintGeometry
(
IMP::display
)
SingletonsConstraint
(
IMP::container
)
XYZStates
(
IMP::domino
)
CylinderGeometry
(
IMP::display
)
I
PairsScoreRestraint
(
IMP
)
SingletonScore
(
IMP
)
_
D
ImageHeader
(
IMP::em
)
ParabolicFit
(
IMP::algebra
)
SingletonScoreRestraint
(
IMP
)
_ConstOptimizer
DataPoints
(
IMP::multifit
)
ImproperSingletonScore
(
IMP::atom
)
Particle
(
IMP
)
SingletonsGeometry
(
IMP::display
)
_ConstRestraint
DataPointsAssignment
(
IMP::multifit
)
InContainerPairFilter
(
IMP::container
)
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
K
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
|
X
|
_
Generated on Thu Mar 24 2011 02:01:42 for IMP by
doxygen
1.7.3
