Re: Modeling a loop

[Tom Lee <49144 AT UDel.Edu>]

Hi Rob,

I took your suggestion and it worked!  Thank you very much.  Apparently
there are some bugs in that commercial software.

Tom

On Fri, 31 Jul 1998, Robert Jorissen wrote:

> Dear fellow MODELLERs
> 
> I have found that the problem mentioned by  Tom Lee about modelling
> loops only occurs for
> the MSI version of MODELLER and not the academic version. I get around
> the problem by
> putting the following in the TOP file.:
> 
> INCLUDE
> DEFINE_STRING VARIABLES = LOOP_CSRFILE LOOP_INI_MODEL
> SET SEQUENCE              = 'aaa'
> SET MODEL                 = 'aaa.pdb'     # initial model of the target
>     :
>     :
> 
> 
> The define_string... line is the only line to be added.
> I can't remember how I trouble-shot the problem as I fixed it a month
> ago.
> 
> I believe this will fix Dr Lee's problem.
> 
> Regards
> Rob
> 
> --
> -----------------------------------------------------
> Robert Jorissen
> 
> Ludwig Institute for Cancer Research
> P.O. BOX 2008, Royal Melbourne Hospital
> Parkville, Victoria 3050, Australia
> 
> phone: ++61-3-9341-3155
> fax:   ++61-3-9341-1938
> 
> e-mail: Robert.Jorissen AT ludwig.edu.au
> -----------------------------------------------------
> 
> 
>