Re: desperation

[Andras Fiser <andras@tuba>]

Hi Duccio,

Try to use comment line:

structureX:1AI1sp:@:@:X:X:undefined:undefined:-1.00:-1.00

instead of 

structureX:1AI1sp

in your alignment file.

In order to use 'check_alignment' command you should at first read in an
alignment as it is shown in an example *top file in the 'check_alignment'
chapter of the manual. The routine that you use is for automated modeling.

Andras

Duccio Calamandrei wrote:
> 
> Hi everybody,
> 
> I' m tempting invane to model a sequence with three template structures.
> 
> Unfortunately   during a preliminary step using only one template, I get
> 
> the
> error message reported within the .log file. what can I do?
> 
> p.s. I enclose .ali .log and .pdb files
> 
> Thank you  for your kindness
> 
> Duccio.
> 
>   -------------------------------------------------------------------------------
> 
> Subject: desperation
> Date: Thu, 09 Mar 2000 17:28:57 +0100
> From: Duccio Calamandrei <tetzuo AT neriserv.chim.unisi.it>
> To: fisera AT rockefeller.edu
> 
>                Name: 1AI1.pdb
>    1AI1.pdb    Type: unspecified type (application/octet-stream)
>            Encoding: base64
> 
>                Name: ret4.log
>    ret4.log    Type: unspecified type (application/octet-stream)
>            Encoding: base64
> 
>                Name: ret4.top
>    ret4.top    Type: unspecified type (application/octet-stream)
>            Encoding: base64
> 
>                 Name: ret4p.ali
>    ret4p.ali    Type: unspecified type (application/octet-stream)
>             Encoding: base64

-- 
    ,
Andras Fiser, PhD            # phone: (212) 327 7206
The Rockefeller University   # fax:   (212) 327 7540 
Box 270, 1230 York Avenue    # e-mail:fisera AT rockefeller.edu
New York, NY 10021-6399, USA # http://salilab.org/~andras