Re: restraints

[Andras Fiser <andras AT viol.rockefeller.edu>]

please use make_schedule command (more info in the manual) that does it,
however it will be difficult to guess how to set them in a proper
balance.


Andras

margot wrote:
> 
> Hi Modeller users/ support
> 
> I am wondering if there is a systematic way to "soften" homology derived
> restraints in the modelling procedure. I want to do something in between
> homology modelling and loop modelling for some segments, for example reduce the
> template locally to backbone or Calpha only, and use softer distance restraints.
> Can anyone advise me of an efficient way of doing so?
> thanksalot
>         margot

-- 
    ,
Andras Fiser, PhD            # phone: (212) 327 7216
The Rockefeller University   # fax:   (212) 327 7540 
Box 270, 1230 York Avenue    # e-mail:fisera AT rockefeller.edu
New York, NY 10021-6399, USA # http://salilab.org/~andras