Frederico,
1. You can delete chains you don't need
or
2. Tell MODELLER to read what you need (MODEL_SEGMENT command)
Unless you had something else in mind...?
Good luck,
Bozidar
> Hi,
>
> Please, I'm trying to use a tetrameric protein
> template, but I'm getting some trouble. The pdb file
> show the chains A, B, C and D atoms positions. So what
> do I have to change in my alingment an TOP files to
> run modeller correctly?
>
> Frederico Moreno
>
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