[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
model_refinement
- To: <modeller_usage@listsrv.ucsf.edu>
- Subject: model_refinement
- From: Modeller Care <modeller-care@ucsf.edu>
- Date: Tue, 02 Sep 2003 08:06:19 -0700
- Cc: <D.Volkov AT artcustoms.ru>
------ Forwarded Message
From: Denis Volkov <D.Volkov AT artcustoms.ru>
X-Mailer: The Bat! (v1.52f)
Reply-To: Denis Volkov <D.Volkov AT artcustoms.ru>
X-Priority: 3 (Normal)
Message-ID: <43123585810.20030902125313 AT artcustoms.ru>
To: modeller <modeller_usage@listsrv.ucsf.edu>
Subject: model_refinment
Hello everyone,
I successfully used Modeller to model unknown protein. Now I'd like
to sent my model to Protein Data Bank. So i checked my structure
using Procheck and find some problems, namely some bad contacts,etc.
In order to clean a structure i used Charmm program for energy
minimization. But after it i obtain structure with bad angles and
bond lengths. Can anybody know how to clean a structure well for
PDBank and what programs should be use for it.
Thanks in advance
Denis Volkov
Enzyme Laboratory,IBCH RAS
--
Best regards,
Denis mailto:D.Volkov AT artcustoms.ru
------ End of Forwarded Message