[modeller_usage] How to discard overhangs in target sequence

[Markus Fischer <Markus.Fischer AT po.uni-stuttgart.de>]

Hello modellers,

if my target sequence is longer compared to the template sequence and in 
the alignment I find an overhang for the target sequence at the N- and 
C-terminus, is there any way to tell modeller by some parameters to use 
only the part of the target sequence covered by the template, or do I 
have to cut the overhang in the alignment?

Thanks,

Markus.


--
Markus Fischer
Institute of Technical Biochemistry
University of Stuttgart, Allmandring 31
D-70569 Stuttgart, Germany                     
Phone: (+49)-711-685-7481
Fax:   (+49)-711-685-3196
E-Mail: Markus.Fischer AT po.uni-stuttgart.de