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[modeller_usage] Search sequence in modeller not responding...!
- To: modeller_usage@listsrv.ucsf.edu
- Subject: [modeller_usage] Search sequence in modeller not responding...!
- From: Nataraj Balkrishnan <natarajmtech AT yahoo.co.uk>
- Date: Fri, 19 Mar 2004 03:52:51 +0000 (GMT)
Dear Modellers,
I tried to search my sequence aganist the Modeller chain database. But my top file containing the search commands did not yield me any result after long time run. Here I pasted my topfile,alignment
Top File
SET SEARCH_RANDOMIZATIONS = 10
SET FILE = 'gam.ali'
SEQUENCE_SEARCH ALIGN_CODES = 'gam'
alignment file:
>P1;gam
sequence:gam:1 : :136 : :
LNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYVDNVD
RFPDHDLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMLVGDVSCI
PFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNKIA*
The logfile did not contain any messages other than usual Heading that appear in all logfiles.
Kindly help me.
Yours,
B.Nataraj
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