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Re: [modeller_usage] Protein with uracil
- To: Michel Seigneuret <seigneuret AT cochin.inserm.fr>
- Subject: Re: [modeller_usage] Protein with uracil
- From: Modeller Caretaker <modeller-care@ucsf.edu>
- Date: Wed, 27 Oct 2004 08:37:00 -0700
- Cc: modeller_usage@listsrv.ucsf.edu
On Wed, Oct 27, 2004 at 03:18:56PM +0200, Michel Seigneuret wrote:
> I am trying to model a protein with a bound uracil.
> I have a template also with bound uracil.
> I modified the testyp.lib file in order to name uracil "U"
> and I included /U* at the end of the alignment for both
> template and target.
> The modeling goes on smoothly but I get a strange uracil
> with protein backbone atoms: N, CA, C,... Therefore Modeller
> thinks U is an aminoacid.
It's hard to diagnose your problem without seeing your input files, and
your modified restyp.lib.
Ben Webb, Modeller Caretaker
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