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[modeller_usage] question
- To: modeller_usage@listsrv.ucsf.edu
- Subject: [modeller_usage] question
- From: "drugdesign" <drugdesign AT yandex.ru>
- Date: Tue, 18 Jan 2005 17:07:36 +0300 (MSK)
- Reply-to: drugdesign AT yandex.ru
I want to make homology modelling of TM domains without loops in GPCR.
But I get error during calculatioons. What wrong I have done?
Respectively yours,
Andrew
I use such alignment:
>P1;1L9H
X-ray:1L9H:37 : :307 : :rhodopsin:Bos Taurus: :
FSMLAAYMFLLIMLGFPINF/YILLNLAVADLFMVFGGFTTT/NLEGFFATLGGEIALWSLVVL/AIMGVAFTWVMALACAAPPLV/FVIYMFVVHFIIPLIVIFFC/VTRMVIIMVIAFLICWLPYAG/FMTIPAFFAKTSAVYNPVIYI*
>P1;1fdx
sequence:fzd1:324 : :623 : :Frizzled:Homo Sapiens: :
GIWSVLCCASTLFTVLTYLV/IIFLSGCYTAVAVAYIAGFLL/TILFMMLYFFSMASSIWWVIL/YFHLAAWAVPAIKTITILALG/FVLAPLFVYLFIGTSFLLAGF/IGVFSVLYTVPATIVIACYFY/VFMIKYLMTLIVGITSGFWIW *