Re: [modeller_usage] Distances longer than 8.0 Angstrom?

[Modeller Caretaker <modeller-care@ucsf.edu>]

Amjad Farooq wrote:
> Does anyone know why I am getting the error message
> "Implied target CA(i)-CA(i+1) distances longer than 
> 8.0 angstroms:" when running MODELLER and how I can
> fix it.

That's not an error message. It's a list of all CA-CA distances longer 
than 8 Angstroms (such distances usually indicate a problem with your 
alignment). In your case, it's an empty list. This is normal.

The actual error message you're seeing is:

> csrrng__299E> Atom index is out of bounds:     2393   
>  2391

This means that you have a restraint which refers to a non-existent 
atom. You should check your restraints file and the initial model.

	Ben Webb, Modeller Caretaker
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