Re: [modeller_usage] Python Modeller Script

[Modeller Caretaker <modeller-care@ucsf.edu>]

Ricardo Nicoluci wrote:
> We used to have a script for modeller in the old type way. Now we 
> translated it to python mode, but the function automodel.generate_method 
> and automodel.rand_method are not working properly. The following error 
> occurs:
> TypeError: 'str' object is not callable

You seem to have forgotten to attach the Python script, but it looks 
like you've tried to do something like
a.generate_method = 'TRANSFER_XYZ'
which won't work. Both generate_method and rand_method take Python 
subroutines as arguments, not strings. So the (working) equivalent of 
this would be
a.generate_method = generate.transfer_xyz

See http://salilab.org/modeller/manual/node39.html and
http://salilab.org/modeller/manual/node40.html

	Ben Webb, Modeller Caretaker
--
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