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[modeller_usage] as1 matrix

To: modeller_usage@listsrv.ucsf.edu
Subject: [modeller_usage] as1 matrix
From: "Schulze, Diana" <dschulze AT ipb-halle.de>
Date: Wed, 22 Feb 2006 08:28:51 +0100

Title: as1 matrix

Hi.

To build an alignment in MODELLER the standard is the as1 matrix. Does somebody know why this matrix is used as standard and whats the difference to pam or blosum?

Thanks Dina

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