Re: [modeller_usage] "Structure not read in" error

["Omid Khalouei" <>]

Hello again,

This is the end of my log-file:

####################################################
Read the alignment from file       : 1ZPA-1A8GA.ali
Total number of alignment positions:    99

 #  Code        #_Res #_Segm PDB_code    Name
-------------------------------------------------------------------------------
 1      1A8GA      99      1       1A8GA Comeon
 2       1ZPA      99      1        1ZPA Comeon
runcmd______> alignment.check()

check_a_343_> >> BEGINNING OF COMMAND
openf5__224_> Open       11  OLD  SEQUENTIAL  
.\examples\atom_files\1A8GA.pdb
rdpdb___303E> No atoms were read from the specified input PDB file, since 
the
             starting residue number and/or chain id in MODEL_SEGMENT (or
             the alignment file header) was not found;
             requested starting position:  1A	:
rdabrk__288W> Protein not accepted:        1
check_a_337E> Structure not read in:        1
####################################################

and here's my alignment file, I followed what I saw on the link that you 
sent me.

> P1;1A8GA
structureX:1A8GA:1	: :99  : :HIV1 PR: : 1.90: 0.19
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF*

> P1;1ZPA
sequence:1ZPA:1 	: :99  :  :HIV1 PR: : 1.90: 0.19
PQITLWKRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF*


Could you please let me know what might be the problem?

Thanks,
Omid K.