[modeller_usage] _modeller.errorS

[Tamas Hegedus <hegedus AT med.unc.edu>]

Hi,

I'm using mod8v2 on RH AS4.

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I have an alignment file with 7 proteins (including the 'sequence').
I got the following error:

_modeller.error: crsplin_223E> Internal error: array too small:  MAXSPL 
current maximum, current need:      400      488

My guess: you have some hard coded buffer size, and I have too many and 
large (?) proteins in the alignment file...

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If I have 1XMI in the alignment file, I have the following error:

_modeller.error: rdpir___648E> Alignment sequence not found in PDB file: 
       1  ./pdb/1XMI.pdb

I checked for extra spaces, numbering, sequence, but I do not find the 
problem...

You can find my script, alignment and pdb files at:
http://www.biohegedus.org/modNbd2.py
http://www.biohegedus.org/testB.pir
http://www.biohegedus.org/1XMI.pdb

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Thanks for your help in advance,
Tamas

--
Tamas Hegedus, PhD          | phone: (1) 919-966 0329
UNC - Biochem & Biophys     | fax:   (1) 919-966 5178
6107 Thurston-Bowles Bldg   | mailto:hegedus AT med.unc.edu
Chapel Hill, NC, 27599-7248 | http://biohegedus.org