Re: [modeller_usage] to build ions

[Modeller Caretaker <modeller-care@ucsf.edu>]

vidhya ganesh wrote:
>      I am new to modeller. I am using mod9v4. I have quite few doubts. I
> performed homology modeling of particular protein , done all steps and
> got a model. But i have to know, how to build ions in my model??

Ions are built in the same way as any other HETATM residue - just use
the '.' residue type in your alignment file and set env.io.hetatm to
True, and Modeller will copy the ion residue from the template to the
target. See http://salilab.org/modeller/9v5/manual/node18.html

	Ben Webb, Modeller Caretaker
-- 
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