Re: [modeller_usage] loop refining of a multi chain protein

[Modeller Caretaker <modeller-care@ucsf.edu>]

subarna thakur wrote:
> Thanks for suggestion ,it worked. After running the script two PDB files
> are generated one with extension .BL00010001 and other with .IL00000001
> extension.Which one should I select and on which basis?

See http://salilab.org/modeller/9v6/manual/node439.html

The generated loop models have the .BL extension. The .IL files are
initial loops, which are unoptimized - you don't want to select those.

	Ben Webb, Modeller Caretaker
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