Re: [modeller_usage] Modeller output directory

[Modeller Caretaker <modeller-care@ucsf.edu>]

Riadh HAMMAMI wrote:
> I have a problem concerning the output directory in modeller.
> 
> I’m running script from different location (“mod9v6
> /script/location/model-full.py”). The generated models (including
> other files) are located in the running folder. I would like to set
> the output directory to a fixed location (for e.g. the same of the
> script “/script/location/”).
> 
> is there any issue ?

There is no way to set the "output directory" in Modeller - files are
generated in the current directory. To generate these files in a
different directory, the easiest way is to 'cd' into that directory
first. You will simply need to modify your automodel script to read in
the alignment file from a different directory (since by default that
will also be read from the current directory).

	Ben Webb, Modeller Caretaker
-- 
modeller-care@ucsf.edu             http://www.salilab.org/modeller/
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage