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[modeller_usage] To add "loop restraints" or ignore the template restraints in a specific region.
- To: modeller_usage@listsrv.ucsf.edu
- Subject: [modeller_usage] To add "loop restraints" or ignore the template restraints in a specific region.
- From: Baptiste Legrand <bap.legrand AT gmail.com>
- Date: Tue, 09 Feb 2010 19:48:32 +0100
Hi all,
It is possible to add helical or strand restraints but is it possible to
add loop/coil restraints?
For example in one part of my alignment, I have this type of structural
alignment:
StructureX: CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Sequence: CCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
Is there a command to add a coil/loop restraint or a trick to ignore the
template restraints in the misalign part?
Thanks.
Best wishes,
Baptiste