Re: [modeller_usage] using the parallel job support
To: Will Dampier <>
Subject: Re: [modeller_usage] using the parallel job support
From: Modeller Caretaker <>
Date: Tue, 16 Mar 2010 10:07:39 -0700
Cc:
On 3/11/10 10:18 AM, Will Dampier wrote:
I'm trying to use the parallel job support built into modeller. I've
gotten the jobs to work with "local_slave" workers but when I try to use
ssh_slave workers I get an OSError
"OSError [Errno 2] No such file or directory:
'/opt/apps/Protein-Threading' from <ssh_clave on iblade003".
I know that ssh_slaves require a shared memory space and I know that
everything in properly mounted ... running: ssh iblade003 'ls
/opt/apps/Protein-Threading' return the proper results.
Hmm, that is odd, because the ssh_slave class doesn't do anything
unusual - it just runs "ssh iblade003" and fires up a copy of Python at
the other end. Usually I would be tempted to suspect autofs (if you
auto-mount those partitions; sometimes autofs can be a little slow and
not mount them in time) or a permissions/environment issue.