Re: [modeller_usage] bad occupancy from loop refinement

[Modeller Caretaker <modeller-care@ucsf.edu>]

On 02/21/2011 11:08 AM, albert wrote:
>    I am using loop refinement protocol based on known PDB file method for
> loop refinement. What surprised me is that: the occupancy for each atom
> in the refined structure is more than 1.

It's impossible to tell what your problem is without seeing your input 
files.

However, Modeller does not use the occupancy field. If one is present in 
your input PDB, it'll leave whatever value is there. If it has to add 
atoms, those atoms will be given an occupancy of 1.

	Ben Webb, Modeller Caretaker
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