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Re: [modeller_usage] Model of the GFP
- To: James Starlight <jmsstarlight AT gmail.com>
- Subject: Re: [modeller_usage] Model of the GFP
- From: Modeller Caretaker <modeller-care@ucsf.edu>
- Date: Tue, 25 Jun 2013 12:59:21 -0700
- Cc: modeller_usage <modeller_usage@listsrv.ucsf.edu>
On 06/24/2013 11:09 AM, James Starlight wrote:
The problem was in the charm-like naming of the Histidine residues in
the input.pdb ( so its produce mismatch). Does it possible to make some
aliases for HIS HSP HSE HSD (to His in sequence entry) as well as other
titrable residues ?
You can add aliases for residue types by editing modlib/restyp.lib and
adding them to the PDB-3 column. For example, both PRO and PRZ are
currently interpreted as "proline".
Ben Webb, Modeller Caretaker
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