Re: [modeller_usage] Denovo loop remodeling

[Ramin Ekhteiari <ramin_ekh AT yahoo.com>]

Is there any rmsd-energy.py script in modeller to calculate the RMSD and energy of all generated pdb files with template.
Data Plot: Energy vs Rmsd?

Thanks
Cheers,

---

From: Modeller Caretaker <modeller-care@ucsf.edu>
To: Ramin Ekhteiari <ramin_ekh AT yahoo.com>
Cc: "modeller_usage@listsrv.ucsf.edu" <modeller_usage@listsrv.ucsf.edu>
Sent: Friday, June 28, 2013 6:15 PM
Subject: Re: [modeller_usage] Denovo loop remodeling

On 6/28/13 7:56 AM, Ramin Ekhteiari wrote:
> Is there any Denovo loop remodeling on the base of the fragment data
> base in MODELLER?

Modeller uses a statistical potential for de novo loop modeling, not a
fragment database.

    Ben Webb, Modeller Caretaker
--
modeller-care@ucsf.edu            http://www.salilab.org/modeller/
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage
_______________________________________________
modeller_usage mailing list
modeller_usage@listsrv.ucsf.edu
https://salilab.org/mailman/listinfo/modeller_usage