Re: [modeller_usage] extended conformations

[Modeller Caretaker <modeller-care@ucsf.edu>]

On 10/15/2013 12:42 AM, fantasticqhl wrote:
> I am sure that the alignment is correct because the target and template
> proteins are the same protein.

If the alignment is correct (i.e. the restraints generated from the 
alignment are correct) then the only other possibility is that you have 
user-defined restraints that are conflicting with the 
alignment-generated restraints. You can try modeling without them to see 
if that fixes things. If you can't figure it out, I can certainly look 
at your input files.

	Ben Webb, Modeller Caretaker
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