Re: [modeller_usage] selection of loop

[Modeller Caretaker <modeller-care@ucsf.edu>]

On 10/9/14, 8:23 PM, Yixin Ai wrote:
>       i have a question and i need your help. i want to refine loops
> (50-60 and 90-100) of my model after building model by modeller9.14.
> however, i don't know how to set the two regions. the part codes of my
> script is:
> *
> *
> return selection(self.residue_range('50:', '60:'),
>                  self.residue_range('90:', '100:'),
>                  selection_status='INITIALIZE')

selection_status hasn't been used for a long long time in Modeller - 
maybe you're looking at a very old script. The correct syntax is simply:

  return selection(self.residue_range('50:', '60:'),
                   self.residue_range('90:', '100:'))

> And what's the difference between
>   self.residue_range('90:', '100:') and  self.residue_range('90',
> '100')?

There's no difference.

	Ben Webb, Modeller Caretaker
--
modeller-care@ucsf.edu             http://www.salilab.org/modeller/
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage