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[modeller_usage] Is it possible to pick all the neigbour residues atoms/residues within mentioned A° of the 'CA' atom is some resudue?
- To: modeller-care@ucsf.edu
- Subject: [modeller_usage] Is it possible to pick all the neigbour residues atoms/residues within mentioned A° of the 'CA' atom is some resudue?
- From: "Mahesh Velusamy" <vmahesh AT ibab.ac.in>
- Date: Thu, 23 Jun 2016 14:25:23 +0530 (IST)
- Cc: modeller_usage@listsrv.ucsf.edu, mailman-owner AT salilab.org
Dear All,
As I can see this from the following link:
https://salilab.org/modeller/9v2/manual/node220.html.
We can able to pick all the atoms within mentioned A° by this following
commend:
# Pick and superpose all atoms within 6 angstroms of the 'CA' atom in
residue '10:':
atmsel = mdl.atoms['CA:10'].select_sphere(6.0)
atmsel.superpose(mdl2, aln)
Where, What I have understood is: It picks atoms that comes within
mentioned A° and not all the atoms of matched residues that comes in the
mentioned A°
So, Here I want to know that Is it possible to pick all the neigbour
residues atoms within mentioned A° of the 'CA' atom is some resudue?
I hope its understandable.
Thanking you in advance