[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
Re: [modeller_usage] (no subject)
- To: Modeller Caretaker <modeller-care@ucsf.edu>
- Subject: Re: [modeller_usage] (no subject)
- From: Markus Heller <mheller AT cdrd.ca>
- Date: Wed, 28 Sep 2016 19:33:45 +0000
- Accept-language: en-US
- Cc: "modeller_usage@listsrv.ucsf.edu" <modeller_usage@listsrv.ucsf.edu>
- Spamdiagnosticmetadata: NSPM
- Spamdiagnosticoutput: 1:99
Ah, ok, makes sense..
Thanks for the exmplanation!
Markus
-----Original Message-----
From: Modeller Caretaker [mailto:modeller-care@ucsf.edu]
Sent: Wednesday, September 28, 2016 12:05 PM
To: Markus Heller
Subject: Re: [modeller_usage] (no subject)
On 9/28/16 10:43 AM, Markus Heller wrote:
> 3. $ python calc_model.py > console_output.txt
Modeller numbers residues starting from 1; it doesn't reset the counter to 1 at the start of a new chain, so your residues are numbered 1:A through 470:A and 471:B through 940:B (see the .ini file).
If you want to also renumber the residues, use the renumber_residues argument to rename_segments():
https://salilab.org/modeller/9.17/manual/node191.html
Ben Webb, Modeller Caretaker
--
modeller-care@ucsf.edu https://salilab.org/modeller/
Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage