Re: [modeller_usage] Reordering chains in template structure

[Modeller Caretaker <modeller-care@ucsf.edu>]

On 5/25/18 2:17 AM, Ajasja Ljubetič wrote:
> I have a template of four single chains, however in the target 
> (single-chain) structure the chain segments are in a different order
...
> *Is it possible to somehow specify this correctly in the alignment 
> file?*

No - your two options are (as you correctly stated) to reorder the input 
PDB or to use multiple templates (losing interchain restraints in the 
latter case).

That said, it's a little unusual to build a single chain model using a 
multi-chain template. What are you trying to do?

	Ben Webb, Modeller Caretaker
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