Re: [modeller_usage] Modeling missing residues from a second template file

[Modeller Caretaker <modeller-care@ucsf.edu>]

On 8/15/19 8:25 AM, Danilo Boskovic wrote:
> Is it possible? I know that i can model residues according to the 
> tutorial: select the residues and use as a template to model the full 
> structure. So i did it and the structure was severely impacted (RMSD 
> 0.25).

If you really want to do this, note that Modeller by default will try to 
move all atoms to best satisfy the restraints. If you want the 
non-missing residues to be exactly the same as the input, make sure you 
only select the missing residues for refinement in select_atoms(), as per
https://salilab.org/modeller/9.22/manual/node23.html

	Ben Webb, Modeller Caretaker
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