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Re: [modeller_usage] Modeller produces primary structure only
- To: Danilo Boskovic <daniloboskovic0095 AT gmail.com>, modeller_usage@listsrv.ucsf.edu
- Subject: Re: [modeller_usage] Modeller produces primary structure only
- From: Modeller Caretaker <modeller-care@ucsf.edu>
- Date: Fri, 3 Jan 2020 00:00:23 -0800
On 12/29/19 7:50 AM, Danilo Boskovic wrote:
sorry, forgot to put the second template in the knowns.
Note also that you selected ~150 residues for loop refinement. This is
unlikely to work - the conformational space is just too large. We
typically don't recommend loop refinement for more than 15-20 residues.
Ben Webb, Modeller Caretaker
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