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Re: [modeller_usage] Questions about alignment and stereo clashes
- To: "Li,Haoxi" <>, "" <>
- Subject: Re: [modeller_usage] Questions about alignment and stereo clashes
- From: Modeller Caretaker <>
- Date: Mon, 30 Mar 2020 12:41:37 -0700
On 3/30/20 11:15 AM, Li,Haoxi wrote:
1. Am I able to use the sequence alignment from external sources,
like Blast?
Of course. Modeller doesn't care where the alignment comes from, as long
as it's in the correct format.
2. When the model was built, I found many stereo clashes in the
structure. Is this normal? Is there any way that I can fix the stereo
clashes?
Most likely this is due to a poor alignment. But you would need to look
at the clashes in a PDB viewer to see what's going on.
Ben Webb, Modeller Caretaker
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