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[modeller_usage] Design a linker for two-domain chimeric protein



Hi all,
I want to perform task almost as in the FAQ #1: I have two separate proteins, and want to receive one -- where these two are joined by the [G4S]n linker. The major difference from the example in FAQ that I have the exact orientation of both domains (they are docked onto the same receptor at different sites), and I want them to be prohibited from movement. The common protocol moves the downstream domain so it changes its position and orientation, but I have to basically "freeze" the both domains, allowing the linker to fullfill the space between them.
How to do this?
 
Anton Chugunov.