Re: [modeller_usage] Treading onto known PDB template

[Modeller Caretaker <modeller-care@ucsf.edu>]

On 6/10/20 5:45 AM, Geoffrey Woollard via modeller_usage wrote:
> I'm studying a transmembrane ion channel (protein 1). There are 
> structures of protein 1 in a closed conformation, and I am interested in 
> the open conformation. There is a very similar protein in an open 
> conformation (protein 2). So I am trying to thread the sequence of 
> protein 1 onto the atomic model of protein 2. I know the template.

This should be very straightforward to do with Modeller. See the simple 
example at https://salilab.org/modeller/9.24/manual/node16.html

	Ben Webb, Modeller Caretaker
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